CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_MARPO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Marchantia polymorpha GN=ndhA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGF  WNLWRQPIGFIVF I+SLAECERLPFDLPEAEEELVAGYQTEYSG+KF  FY+ASYLNLLVSSLFVT+LYLGG + SI
Sbjct:  186 LSNSLSTVDIVEAQSKYGFLSWNLWRQPIGFIVFFIASLAECERLPFDLPEAEEELVAGYQTEYSGMKFAFFYLASYLNLLVSSLFVTILYLGGWHFSI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chaetosphaeridium globosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.475e-42
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LS+SLSTVDIV  QSKYG  GWN+WRQPIGFI FLI+SLAECERLPFDLPEAEEELVAGYQTEY GIKFGLFYV SYLNLLVS+LFV+VLYLGG N S+
Sbjct:  182 LSHSLSTVDIVEEQSKYGILGWNIWRQPIGFIAFLIASLAECERLPFDLPEAEEELVAGYQTEYCGIKFGLFYVGSYLNLLVSALFVSVLYLGGWNFSL 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_STAPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Staurastrum punctulatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            +S+SLST++IV  Q+KYG  GWN+WRQPIGF VFLISSLAECERLPFDLPEAEEELVAGYQTEY GIKFGLFYVASY+NLLVS+LFV+VLYLGG + SI
Sbjct:  186 MSHSLSTIEIVEQQAKYGILGWNIWRQPIGFFVFLISSLAECERLPFDLPEAEEELVAGYQTEYCGIKFGLFYVASYINLLVSALFVSVLYLGGWDFSI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zygnema circumcarinatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGW 676
            +SNSLST++IV  QS++G  GWN+WRQP+GFI F+IS+LAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL  SSLFVT+LYLGG + +I       W
Sbjct:  185 MSNSLSTIEIVEQQSRFGILGWNIWRQPVGFIAFVISALAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLFASSLFVTILYLGGWSPNISFEQVFNW 291          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chara vulgaris GN=ndhA PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYL 664
            LSN+LST DIV  Q KYG   WN+WRQP+GFI F I+SLAECERLPFDLPEAEEELVAGYQTEYSGIKFG+FYVASYLNLLVSSLF  VLYLGG N  I T L
Sbjct:  186 LSNTLSTSDIVEQQCKYGILSWNIWRQPVGFITFFIASLAECERLPFDLPEAEEELVAGYQTEYSGIKFGIFYVASYLNLLVSSLFAVVLYLGGWNFPIPTTL 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_NOSP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  QS YG  GWN+WRQPIGF++F I++LAECERLPFDLPEAEEE+VAGYQTEYSG+KFGLFY+ SY+NL++SSL V +LYLGG +  I   L  GWL
Sbjct:  186 MSNSLSTVDIVNQQSGYGILGWNIWRQPIGFLIFWIAALAECERLPFDLPEAEEEIVAGYQTEYSGMKFGLFYLGSYVNLILSSLLVAILYLGGWDFPIPLNLIAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chlorokybus atmophyticus GN=ndhA PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            LSNSLSTV+IV  QS YG  GWN+WRQPIGF+ FLI++LAECERLPFDLPEAEEELVAGYQTEYSG+KFGLFYV SY+NLL+SSLF T+LYLGG
Sbjct:  186 LSNSLSTVEIVEQQSAYGILGWNVWRQPIGFVSFLIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFGLFYVGSYVNLLLSSLFATILYLGG 279          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_MESVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride GN=ndhA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LS+SLST+DIV  QS YG  GWN+WRQPIGFI F+I++LAECERLPFDLPEAEEELVAGYQTEY+G+KFGLFY+ SY+NLLVS+LF +VLYLGG +L I
Sbjct:  186 LSDSLSTIDIVQKQSTYGILGWNIWRQPIGFIAFIIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYIGSYVNLLVSALFASVLYLGGWSLPI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.370e-39
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KFGLFYV SY+NL++S+L V++LYLGG    I      GWL
Sbjct:  186 MSNSLSTIDIVEQQSGYGILGWNIWRQPVGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFGLFYVGSYVNLVLSALIVSILYLGGWEFPIPLDKLAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_MICAN (NAD(P)H-quinone oxidoreductase subunit 1 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK*ISGWNLW 706
            +SNSLST+DIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFYV SY+NL++S+L   VLYLGG    I      GWL  +S  N W
Sbjct:  186 MSNSLSTIDIVEQQSGYGILGWNIWRQPVGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYVGSYVNLVLSALVFAVLYLGGWEFPIPVNALAGWLG-VSETNPW 301          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_MARPO2.924e-4386.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHAGL2.475e-4284.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_STAPU2.096e-4181.82NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ZYGCR6.097e-4173.83NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHAVU7.963e-4179.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NOSP73.026e-4071.30NAD(P)H-quinone oxidoreductase subunit 1 OS=Nostoc... [more]
NU1C_CHLAT1.150e-3981.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MESVI1.961e-3976.77NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SYNP24.370e-3968.52NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_MICAN2.169e-3864.96NAD(P)H-quinone oxidoreductase subunit 1 OS=Microc... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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