CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nephroselmis olivacea GN=ndhA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            L++SLSTVDIV +QS +G   WN+WRQPIGF+ FLI++LAECERLPFDLPEAEEELVAGYQTEY+G+KFGLFYV SY+NLLVS  FVTVLYLGG
Sbjct:  188 LADSLSTVDIVESQSSWGILTWNIWRQPIGFVAFLIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYVGSYVNLLVSGCFVTVLYLGG 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7424) GN=ndhA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEE+VAGYQTEY+G+KFGLFYV SY+NL++S+L   VLYLGG    +      GWL
Sbjct:  186 MSNSLSTIDIVDQQSGYGILGWNIWRQPVGFLIFWIAALAECERLPFDLPEAEEEIVAGYQTEYAGMKFGLFYVGSYVNLVLSALVFAVLYLGGWEFPVPLDSLAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGW 676
            +SNSLST+DIV  QS YG  GWN+WRQP+GFI+F I+ LAECERLPFDLPEAEEELVAGYQTEY+G+KF L+Y+ASY+NL++SSL V VLYLGG    +   L   W
Sbjct:  186 MSNSLSTIDIVEQQSSYGILGWNIWRQPLGFIIFWIAVLAECERLPFDLPEAEEELVAGYQTEYTGMKFALYYLASYVNLVLSSLLVAVLYLGGWESPLPVELISNW 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP8 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 8801) GN=ndhA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+G I+F I++LAECERLPFDLPEAEEE+VAGYQTEYSG+KFGLFYV SY+NL++S+L   +LYLGG    +      GWL
Sbjct:  186 MSNSLSTIDIVQQQSGYGILGWNVWRQPVGLIIFWIAALAECERLPFDLPEAEEEIVAGYQTEYSGMKFGLFYVGSYVNLVLSALVFAILYLGGWEFPVPLDKLAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GFI+F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFYV SY+NL++S+L V++LYLGG    I       W+
Sbjct:  186 MSNSLSTIDIVDQQSGYGILGWNIWRQPVGFIIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYVGSYVNLILSALLVSILYLGGWEFPIPLDRVADWI 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GFI+F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFYV SY+NL++S+L V++LYLGG    I       W+
Sbjct:  186 MSNSLSTIDIVDQQSGYGILGWNIWRQPVGFIIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYVGSYVNLILSALLVSILYLGGWEFPIPLDRVADWI 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ANASP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=ndhA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            +SNSLSTVDIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY++SY+NL++S+L V VLYLGG +  I
Sbjct:  186 MSNSLSTVDIVNQQSDYGILGWNIWRQPLGFMIFWIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLILSALLVAVLYLGGWDFPI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ANAVT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            +SNSLSTVDIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY++SY+NL++S+L V VLYLGG +  I
Sbjct:  186 MSNSLSTVDIVNQQSGYGILGWNIWRQPLGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLVLSALLVAVLYLGGWDFPI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L  +VLYLGG +  I       WL
Sbjct:  186 MSNSLSTIDIVDQQSGYGILGWNIWRQPVGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALVFSVLYLGGWDFPIPLENVANWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PROMM (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SSL V VLYLGG    I      GWL
Sbjct:  186 MSNSLSTVDIVAQQNGAGLLSWNVWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSSLLVAVLYLGGWGFPIPVEWLAGWL 293          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_NEPOL6.310e-3878.72NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CYAP76.310e-3866.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_TRIEI1.076e-3768.22NAD(P)H-quinone oxidoreductase subunit 1 OS=Tricho... [more]
NU1C_CYAP81.076e-3766.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNP61.836e-3766.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNE71.836e-3766.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_ANASP3.131e-3772.73NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabae... [more]
NU1C_ANAVT4.090e-3772.73NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabae... [more]
NU1C_SYNY31.190e-3665.74NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMM1.190e-3666.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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