CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SSL V VLYLGG    I      GWL
Sbjct:  186 MSNSLSTVDIVAQQNGAGLLSWNVWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSSLLVAVLYLGGWGFPIPVEWLAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH7803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.462e-36
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V+VLYLGG    +      GWL
Sbjct:  186 MSNSLSTVDIVSQQTGAGILSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSALLVSVLYLGGWGFPVPVEWLAGWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +SNSLSTVDIV  Q+  GF  WN+WRQP+GFI+F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+A Y+NL++S+L V+VLYLGG
Sbjct:  186 MSNSLSTVDIVEQQNTAGFLSWNIWRQPVGFIIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLAGYINLVLSALLVSVLYLGG 279          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLG 673
            +SNSLSTVDIV  Q+ YG  GWN+WRQP+GFI+F I++LAECER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL +S+L   VLYLGG    I   +  G
Sbjct:  186 MSNSLSTVDIVNQQAGYGILGWNIWRQPVGFIIFWIAALAECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLFAVLYLGGWEFPISLSVISG 291          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP4 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  QS  G  GWN+WRQP+G I+F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++S+L V +LYLGG +  I   L   W+
Sbjct:  186 MSNSLSTVDIVNQQSGLGILGWNVWRQPVGLILFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALMVAILYLGGWDFPIPLNLVASWV 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+A Y+NL++S++ V+VLYLGG    I      GWL
Sbjct:  187 MSNSLSTVDIVGQQTGAGILSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLAGYINLVLSAVLVSVLYLGGWGFPIPVEWLAGWL 294          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PROMA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus GN=ndhA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  Q+  GF  WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SSL V+VLYLGG    I   L    L
Sbjct:  186 MSNSLSTIDIVNQQNTLGFLSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYINLVLSSLLVSVLYLGGWGFPIPVELIANTL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+ RQPIGF++F I++LAECERLPFDLPEAEEELVAGYQTEY+G+KF LFY+ SY+NL++SS+ V VLY GG +L I   +   W+
Sbjct:  186 MSNSLSTIDIVNQQSGYGILGWNVIRQPIGFMLFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSSILVAVLYFGGWDLPIPATMIADWI 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.007e-35
Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLST+DIV  QS YG  GWN+WRQP+GF +F I++LAECERLPFDLPEAEEE+VAGYQTEY+G+KF LFY+ SY+NL++S+L   +LYLGG    +       WL
Sbjct:  186 MSNSLSTIDIVEQQSGYGILGWNIWRQPVGFFIFWIAALAECERLPFDLPEAEEEIVAGYQTEYAGMKFALFYLGSYVNLVLSALVFAILYLGGWEFPVPLDKLAEWL 293          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 70/108 (64.81%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SNSLSTVDIV  Q+  G   WN+WRQP+GF++F I +LAECERLPFDLPEAEEELVAGYQTEYSG+KF LFY+ SY+NL++S+L V++LYLGG    I       WL
Sbjct:  186 MSNSLSTVDIVNQQTGAGVLSWNIWRQPVGFLIFWICALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYINLVLSALLVSILYLGGWGFPIPVEWLASWL 293          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_PROM31.190e-3666.67NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_SYNPW3.462e-3664.81NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMT4.522e-3674.47NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PLEBO5.906e-3666.98NAD(P)H-quinone oxidoreductase subunit 1 OS=Plecto... [more]
NU1C_CYAP45.906e-3665.74NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNPX7.713e-3664.81NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMA7.713e-3665.74NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_ACAM17.713e-3665.74NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryo... [more]
NU1C_CYAA51.007e-3562.96NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNS31.316e-3564.81NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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