CX291486

Overview
NameCX291486
Unique NameCX291486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 51/151 (33.77%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  218 LQDVVITGENGTIDGQGAIWW--NMWRQRTLPFTRPN--LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            + ++VITG+ G +DGQG   W  N   ++      PN  +++F+N+  +  S V   NS F++++   C N++I+ VT+ AP DSPNTDGI    SS + I ++ I  GDD +++  G  +  I      +G+T        P  GI++GS
Sbjct:  127 VDNLVITGK-GNLDGQGPAVWSKNSCTKKYDCKILPNSLVMDFVNNGEV--SGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI------TGVT------CGPGHGISIGS 262          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  248 GTIDGQGAIWWN---MW---RQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            G IDGQG  WW     W   R+      RP  I+F  S  +II  +   NSP +++    C  V I  ++I AP DSPNTDGID  +S N  ++ + I TGDD VA+ +G           SS I I  +    P  GI++GS
Sbjct:  154 GVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLI-CGPGHGISIGS 284          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  248 GTIDGQGAIWW--NMWRQRTLP-FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEY---GIAYGHPSSGITI 610
            G IDG G IWW  +      LP    P  + F+   ++ +SN+  +N+   ++    C NV    + + +PADSPNTDGI    + N+ I+DS + TGDD +++ SG +     GI  G P  GI+I
Sbjct:  167 GRIDGNGHIWWPKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCG-PGHGISI 292          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  218 LQDVVITGENGTIDGQGAIWW--NMWRQRTLPFTRPN--LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            + ++VITG+ G +DGQG   W  N   ++      PN  +++F+N+  +  S V   NS F++++   C +++I+ VT+ AP DSPNTDGI    SS + I ++ I  GDD +++  G  +  I      +G+T        P  GI++GS
Sbjct:  127 VDNLVITGK-GNLDGQGPAVWSKNSCTKKYDCKILPNSLVMDFVNNGEV--SGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI------TGVT------CGPGHGISIGS 262          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 52/152 (34.21%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  218 LQDVVITGENGTIDGQGAIWWNMWR-----QRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            + ++V+TG  GT  G+G   W         Q  LP   P  ++F N +++ I+ +   N+  +++  V   NV I+ + + APA+SPNTDGI   ++ NV I DS I+TGDD V+V           G  S+ +T+ RV    P  G++VGS
Sbjct:  135 VDNLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLP---PTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVI-CGPGHGLSVGS 270          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 46/152 (30.26%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  212 DGLQDVVITGENGTIDGQGAIWW--NMWRQRTLPFT-RPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            D +Q++ + G  GTI+G G IWW  +    + LP    P  + F  S+ +I+ N+  +N+   ++    C NV    + + AP +SPNTDGI    + N+ I    I TGDD +++ +G           S  + +  +T   P  GI++GS
Sbjct:  174 DSVQNLRVEG-GGTINGNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNG-----------SRKVRVNDIT-CGPGHGISIGS 312          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  248 GTIDGQGAIWWNM---------WRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW---DEYGIAYGHPSSGITI 610
            GT++G G  WW++             + P   P +I F  S +I +  +  QNSP +++    C  V+I  + I +P  SPNTDGI   ++ +V I +S +S GDD +++ +G    D  G+  G PS GI+I
Sbjct:  178 GTVEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCG-PSHGISI 309          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 48/153 (31.37%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  218 LQDVVITGENGTIDGQGAIWWNM------WRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            + ++VITG+ G +DGQG   W+       +  + LP +   +++F+N+  +  S +   NS F++++   C +++I+ V + AP DSPNTDGI    SS V I ++ I  GDD +++  G  +  I      +G+T        P  GI++GS
Sbjct:  127 VDNLVITGK-GKLDGQGPAVWSKNSCVKKYDCKILPNSL--VMDFVNNGEV--SGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNI------TGVT------CGPGHGISIGS 262          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 41/130 (31.54%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  239 GENGTIDGQGAIWW--NMWRQRTLPFTR-PNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDE---YGIAYGHPSSGITI 610
            G  G I+G G  WW  +    ++ P T+ P  +   N +++ + N+  +N+    I    C+ V +  V I AP DSPNTDGI   ++ N+ + +S I TGDD ++++ G      + +  G P  GI+I
Sbjct:  163 GSTGIINGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCG-PGHGISI 291          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 42/156 (26.92%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  200 FIHGDGLQDVVITGENGTIDGQGAIWWNMW--RQRTLPF-TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            +I  + + ++ + G  GT +G G  WW+    R+++LP  + P  + F + +++I+S++  ++S   ++    C +V+   + + AP  SPNTDGI    +  + + +S I TGDD ++++SG            S + I       P  GI++GS
Sbjct:  165 WIEFEDISNLTLEG-GGTSNGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG------------SKMVIATNITCGPGHGISIGS 307          
The following BLAST results are available for this feature:
BLAST of CX291486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PGLR2_MAIZE1.288e-1333.77Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR2_CRYJA1.682e-1337.76Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
QRT2_ARATH2.197e-1335.43Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR1_MAIZE6.391e-1333.11Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR1_ARATH1.090e-1234.21Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR_ACTDE2.429e-1230.26Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR4_ARATH4.143e-1233.08Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR3_MAIZE5.411e-1231.37Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
ADPG1_ARATH2.685e-1131.54Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_PERAE4.580e-1126.92Polygalacturonase OS=Persea americana PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03009E03SK OF2 Citrus clementina cDNA clone C03009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291486 ID=CX291486; Name=CX291486; organism=Citrus clementina; type=EST; length=673bp
GGATTCGGCCGAGGCGCTTCTTTATGTTCCTCCTGGGGTGTACTTAACGG
GAAGCTTTAATCTTACCAGTCACATGACTCTTTATTTGGCTAAAGGTGCT
GTTATCAAGGCCACTCAGGATACTTGGAATTGGCCTTTAATTGCCCCTTT
GCCATCGTATGGAAGGGGAAGGGAGCGCCCTGGAGGAAGGTATATGAGTT
TTATTCATGGTGATGGACTTCAGGACGTGGTAATCACTGGTGAGAATGGA
ACAATCGATGGTCAGGGAGCCATCTGGTGGAACATGTGGAGGCAGAGAAC
TCTTCCTTTCACGAGACCAAATCTCATTGAATTTATGAATTCTAGGAGCA
TAATAATTTCCAATGTGATTTTCCAGAATTCACCCTTTTGGAACATTCAC
CCTGTTTATTGCAGCAATGTTGTTATCCGTTATGTAACCATCTTGGCTCC
AGCTGACTCTCCCAATACCGATGGGATTGATCCAGATTCAAGCTCGAATG
TCTGCATAGAGGACTCCTACATTTCAACAGGAGATGATCTTGTGGCGGTA
AAGAGTGGGTGGGATGAGTATGGGATAGCTTATGGTCACCCTAGCTCTGG
CATCACCATTAGGCGGGTAACAGGATCATCTCCATTTTCCGGAATTGCAG
TTGGGAGTGAAACCTCGGGTGGA
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