CX291499

Overview
NameCX291499
Unique NameCX291499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.931e-21
Identity = 65/184 (35.33%), Postives = 98/184 (53.26%), Query Frame = 2
Query:   53 FEAELADV--IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            FE  L +   + V+K SI G+ + G L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +I A    N      G +TT  EL+ IE
Sbjct:   34 FEGVLREALEVEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIE 214          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 68/198 (34.34%), Postives = 98/198 (49.49%), Query Frame = 2
Query:   14 LVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            +V  G    F +    EL   + +V T I G+ IIG L +GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++  GL  N      GS TT  EL  IE VF
Sbjct:   25 IVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVTTGFELGRIEEVF 216          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.017e-20
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 604
            V + ++  + ++G     N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T   EL  ++ V
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGPELMRMQQV 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            +++T+I  + ++G L  GN + +LLP T    E++ ++    D V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + TIA  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANRNGVLVGSSTTGAEILRIQRAF 221          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 604
            V + ++  + ++G     N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G +T   E   I+ V
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGPEFMRIQQV 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 56/176 (31.82%), Postives = 93/176 (52.84%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 604
            + + + SI G+ +IG + A N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  + A +  N      G DTT  E+  I+ V
Sbjct:   46 VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDTTPIEIDRIDDV 216          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 66/192 (34.38%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   35 ESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            +    TF+ E      +++T+I  + +IG   AGN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSATTGPEILRIQRAF 221          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.868e-20
Identity = 57/176 (32.39%), Postives = 93/176 (52.84%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 604
            + V + SI  + +IG +   N NGL++P+ +    L  L     D   V +++++++A+GN I  NDH A+ H +    + + I D LGVE  R TI   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  + A +  N      G DTT  E+  I+ V
Sbjct:   44 VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDTTPIEMDRIDDV 214          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 60/179 (33.52%), Postives = 93/179 (51.96%), Query Frame = 2
Query:   59 AELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL 586
            AE  DV  +V+T I  T + G L  GN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +  ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  TT  E+
Sbjct:   40 AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.307e-19
Identity = 58/185 (31.35%), Postives = 94/185 (50.81%), Query Frame = 2
Query:   50 TFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESV 604
            T   E A  + +V+T+I  + IIG L  GN NGL++    T++E+     +L +   +  +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++  GL  N +    G  T+  EL  IE +
Sbjct:   35 TTRYEEALKVEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGTSGYELGRIEDI 215          
The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METTH6.931e-2135.33Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METMJ1.182e-2034.34Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_PYRAE2.017e-2035.63Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_SULAC3.440e-2035.23Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_PYRAR3.440e-2035.06Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_THEVO4.493e-2031.82Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_SULTO4.493e-2034.38Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_THEAC5.868e-2032.39Translation initiation factor 6 OS=Thermoplasma ac... [more]
IF6_STAMF1.001e-1933.52Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METHJ1.307e-1931.35Translation initiation factor 6 OS=Methanospirillu... [more]

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Properties
Property NameValue
Genbank descriptionC03009H04SK OF2 Citrus clementina cDNA clone C03009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bp
GAGGGCTTCTTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCA
CATTTGAGGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATT
GGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCT
TCTCTTGCCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACA
GCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCC
CTGGGCAATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGA
TCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAG
TTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCC
TTCTCCAACAGAGGAGGCTTGGTCCACCCTCACACATCCATTGAAGACTT
GGATGAACTTTCAACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGA
ACCGTGGAAGCGAAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACA
GCATTCTGTGGATCAGACACCACAGCAACTGAACTCTCTGTTATTGAGAG
TGTTTTCAAGTTG
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