CX291555

Overview
NameCX291555
Unique NameCX291555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLE+GRTL+DY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFA KQLE+GRTL+DY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLR 247
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTL+DY IQ ESTLHLVLRLR
Sbjct:   14 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.427e-13
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            +L  KI DKEG+P  QQR IFAGKQLED +T+ADY IQ ESTLH+VLRLRGG
Sbjct:   25 DLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 2
Query:  113 KIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            KI DKEG+P  QQR I+AGKQLED +TLADY IQ ESTLH+VLRLRGG
Sbjct:   29 KIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  113 KIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGGVQI 262
            ++E+KEGIPP QQR IF+GKQ+ D +T ADYK+Q  S LHLVL LRGG  I
Sbjct:   29 RVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
The following BLAST results are available for this feature:
BLAST of CX291555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
UBIQ_LEIMA5.224e-1680.77Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA3.386e-1578.85Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE4.423e-1582.00Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC2.427e-1373.08Ubiquitin-like protein OS=Autographa californica n... [more]
UBIL_NPVOP9.222e-1377.08Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
NEDD8_DROME6.609e-1164.71NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC03010E12SK OF2 Citrus clementina cDNA clone C03010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291555 ID=CX291555; Name=CX291555; organism=Citrus clementina; type=EST; length=545bp
AATGAGAGAAAGAGAGAGGCATCTCTCTTTCTCTCTACCCTCCGACTCTC
TCTTCGCTTCCCCCTTTTTTTTTCTCTCTCTTTATCTGTGGGTGGCTCCT
AATCTCTCTGTCAAGATCGAGGACAAGGAAGGGATCCCACCCGGCCAGCA
GAGGTCCATCTTTGCTGGCAAACAACTTGAGGATGGTCGCACGCTTGCAG
ACTACAAGATCCAGGAGTCAACCCTACATTTGGTCCTCCGTCTCAGGGGT
GGCGTGCAGATTTTTGTAAAAACCCTGACCCGCAAAACATAACTTTGGAG
GTCGAAAGCTCTGACACAATCGACAATGTCAAGGCTAAGATCCAGGACAA
GAAGCGGATTCCGCCACCAGCAGAGGCAGATCTTTTGAAGTTTCCTTTTT
TTTTTTTTTGAAGAGGTTATAAGTTTCTATTGGTTTGTGGATGTCGGGAT
AATTTTTGGAATGGTTCCCTCAGGTTTGACCCTGAGAATGTATTGCGGGT
GTTGGGGAAATTATTTGTGGTTGGCCGGGTAATTTTTGGAAGCCT
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