CX291610

Overview
NameCX291610
Unique NameCX291610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +NAH+FIS LP GY T VGE+GVQ+SGGQ+QRIAIARAV+KNP ILLLDE+TSALDAES ++VQ+AL+ +M  RTT+V+AH L+TI+NAD+I  +K GV  E+G+HD LM
Sbjct:  629 ANAHSFISQLPQGYNTLVGEKGVQMSGGQRQRIAIARAVIKNPNILLLDESTSALDAESTKLVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELM 738          

HSP 2 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 74/117 (63.25%), Postives = 96/117 (82.05%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 391
            SN+H+FI  LP+GY T +GE+  QLSGGQKQRIAIARA+++NPKILLLDE+TSALDA+S ++VQ+ALE VM  RTT+V+AH L TI+NAD IA V+ G I E+G+HD L++  +G Y
Sbjct: 1307 SNSHSFIIDLPNGYNTELGEKYTQLSGGQKQRIAIARAIIRNPKILLLDESTSALDADSTKLVQEALENVMKGRTTIVIAHNLLTIQNADCIAYVRAGQIIERGTHDELLE-AEGPY 1422          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +NA +FI +LP+GY T VGE G QLSGGQKQRIAIARAVL+NPKILLLDEATSALDAESE++VQ AL+ VM  RTT+VVAHRL+TI+N D I V+++G + E GSH  LM
Sbjct:  486 ANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELM 595          

HSP 2 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 71/117 (60.68%), Postives = 95/117 (81.20%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 391
            +NAH FI  +  GY+T+ G++GVQLSGGQKQR+AIARAVLK+P +LLLDEATSALD  SE++VQ+AL+++M  RTTV+VAHRL+TI+ AD +AV+  G + E+GSH  L+ I +G Y
Sbjct: 1119 ANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFY 1235          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 75/110 (68.18%), Postives = 95/110 (86.36%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +NAH FIS  P GYET VGERGVQLSGGQKQRIAIARA+LKNP+I++LDEATSALD++SE +VQ AL+ +M  RTT+V+AHRL+T++NAD+I V+ +G IAE G+H+ LM
Sbjct:  639 ANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHNELM 748          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR3_MOUSE (Multidrug resistance protein 3 OS=Mus musculus GN=Abcb1a PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NAD+IA    GVI EQG+HD LM+
Sbjct:  503 ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613          

HSP 2 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP  Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT +V+AHRL+TI+NAD+I V++NG + E G+H  L+
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NAD+IA    GVI EQG+HD LM+
Sbjct:  506 ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 616          

HSP 2 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP  Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT +V+AHRL+TI+NAD+I V++NG + E G+H  L+
Sbjct: 1150 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLL 1259          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NAD+IA    GVI EQG+H+ LMK
Sbjct:  506 ANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMK 616          

HSP 2 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP  Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT +V+AHRL+TI+NAD+I V++NG + E G+H  L+
Sbjct: 1150 ANIHQFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1259          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NAD+IA    GVI EQG+H+ LMK
Sbjct:  506 ANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMK 616          

HSP 2 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 68/110 (61.82%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP  Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT VV+AHRL+TI+NAD+I V++NG + E G+H  L+
Sbjct: 1151 ANIHQFIDSLPEKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLL 1260          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR1_HUMAN (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NAD+IA   +GVI E+G+HD LMK
Sbjct:  507 ANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMK 617          

HSP 2 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP+ Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT +V+AHRL+TI+NAD+I V +NG + E G+H  L+
Sbjct: 1152 ANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLL 1261          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +NA +FI +LP+GY T VGE G QLSGGQKQRIAIARAVL+NPKILLLDEATSALDAESE++VQ AL+ VM  RTT+V+AHRL+TI+N D I V+++G + E GSH  L+
Sbjct:  487 ANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELI 596          

HSP 2 Score: 147.517 bits (371), Expect = 6.369e-35
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 391
            +NAH FIS +  GY T+VG++GVQLSGGQKQR+AIARAVLK+P +LLLDEATSALD  +E+ VQ+AL+++M  RTT++VAHRL+TI+ AD I V+  G + E+GSH  L+  +DG Y
Sbjct: 1121 ANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFY 1237          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: MDR1_CRIGR (Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            +NA++FI  LPH ++T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE VVQ AL++    RTT+V+AHRL+T++NADIIA    GVI EQG+H+ LM+
Sbjct:  504 ANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMR 614          

HSP 2 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +N H FI +LP  Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+AL++    RT +V+AHRL+TI+NAD+I V++NG + E G+H  L+
Sbjct: 1149 ANIHQFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1258          
The following BLAST results are available for this feature:
BLAST of CX291610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB3_DICDI5.210e-3767.27ABC transporter B family member 3 OS=Dictyostelium... [more]
AB13B_ARATH6.804e-3770.00ABC transporter B family member 13 OS=Arabidopsis ... [more]
ABCB4_DICDI1.161e-3668.18ABC transporter B family member 4 OS=Dictyostelium... [more]
MDR3_MOUSE1.516e-3667.57Multidrug resistance protein 3 OS=Mus musculus GN=... [more]
MDR1_MOUSE1.516e-3667.57Multidrug resistance protein 1 OS=Mus musculus GN=... [more]
MDR2_CRIGR1.980e-3667.57Multidrug resistance protein 2 OS=Cricetulus grise... [more]
MDR1_RAT1.980e-3667.57Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
MDR1_HUMAN1.980e-3667.57Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
AB14B_ARATH2.586e-3668.18ABC transporter B family member 14 OS=Arabidopsis ... [more]
MDR1_CRIGR3.377e-3667.57Multidrug resistance protein 1 OS=Cricetulus grise... [more]

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Properties
Property NameValue
Genbank descriptionC03011C06SK OF2 Citrus clementina cDNA clone C03011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291610 ID=CX291610; Name=CX291610; organism=Citrus clementina; type=EST; length=697bp
AGGAGCTACCGAAGAGGAGATCATTGCGGCTACAGAAGCATCAAATGCAC
ACAACTTCATAAGTGCATTGCCACATGGCTACGAGACCAATGTTGGGGAA
CGAGGAGTGCAGCTATCCGGTGGGCAGAAGCAGAGAATTGCCATAGCAAG
AGCTGTATTAAAGAACCCAAAAATTCTTTTGCTTGATGAGGCAACAAGTG
CACTGGATGCAGAATCAGAGCGTGTAGTACAAGATGCATTGGAGAGAGTG
ATGGTTAACAGGACAACTGTGGTTGTAGCTCACCGCCTTACCACTATAAA
AAATGCTGATATAATAGCTGTAGTGAAGAATGGTGTGATTGCAGAGCAGG
GAAGCCATGATGCACTGATGAAAATCACTGATGGGGCTTATGCTTCCTTG
GTAGCTCTCCATGTGAGCTCATCATAAGGAGAAGCAGAGTGCGTTACCAA
TAGTTGAACACATGACTTCATCTGTCCCGGGGCCATCACCGTGGAACTGA
AATTTTTGTCAGCAGCAGTTTATTTTTGCCACACCTATTTACCTAGCTTT
AAAAGTAGGAACTTACTTACACTTTACCAATTTCAAGAAGGGAATTTGAG
AACTTTGACATTGTATGAATTTCCATTAAAAATTTTGAGCAATTACACAT
GTAAGTAATCCTTCAGAATTTTTATTTGTTAGTTTTCCTTTCTTTGC
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