CX291610

Overview
NameCX291610
Unique NameCX291610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN3_BACSK (Methionine import ATP-binding protein metN 3 OS=Bacillus clausii (strain KSM-K16) GN=metN3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQG 352
            QLSGGQKQR+ IARA+  NPK+LL DEATSALD ++   + D L  +   +N T V++ H +  I K    +AV++NG I EQG
Sbjct:  140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPKTTDSILDLLLDINEKLNLTIVLITHEMHVIQKICHQVAVMENGKIVEQG 223          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SHISS (Methionine import ATP-binding protein metN OS=Shigella sonnei (strain Ss046) GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SHIFL (Methionine import ATP-binding protein metN OS=Shigella flexneri GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SHIF8 (Methionine import ATP-binding protein metN OS=Shigella flexneri serotype 5b (strain 8401) GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SHIDS (Methionine import ATP-binding protein metN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SHIBS (Methionine import ATP-binding protein metN OS=Shigella boydii serotype 4 (strain Sb227) GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_GEOKA (Methionine import ATP-binding protein metN OS=Geobacillus kaustophilus GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQG 352
            QLSGGQKQR+ IARA+  NPK+LL DEATSALD ++   + D L  +   +  T V++ H +  I K  D +AV+++G I EQG
Sbjct:  140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDAILDLLVDINKRLGLTIVLITHEMHVIRKICDRVAVMESGRIVEQG 223          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_ECOUT (Methionine import ATP-binding protein metN OS=Escherichia coli (strain UTI89 / UPEC) GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_ECOLI (Methionine import ATP-binding protein metN OS=Escherichia coli (strain K12) GN=metN PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_ECOL6 (Methionine import ATP-binding protein metN OS=Escherichia coli O6 GN=metN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  113 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQ 349
            LSGGQKQR+AIARA+  NPK+LL DEATSALD  + R + + L+ +   +  T +++ H +  +K   D +AV+ NG + EQ
Sbjct:  141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222          
The following BLAST results are available for this feature:
BLAST of CX291610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN3_BACSK1.169e-1250.00Methionine import ATP-binding protein metN 3 OS=Ba... [more]
METN_SHISS1.526e-1246.34Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIFL1.526e-1246.34Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIF81.526e-1246.34Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIDS1.526e-1246.34Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIBS1.526e-1246.34Methionine import ATP-binding protein metN OS=Shig... [more]
METN_GEOKA1.526e-1248.81Methionine import ATP-binding protein metN OS=Geob... [more]
METN_ECOUT1.526e-1246.34Methionine import ATP-binding protein metN OS=Esch... [more]
METN_ECOLI1.526e-1246.34Methionine import ATP-binding protein metN OS=Esch... [more]
METN_ECOL61.526e-1246.34Methionine import ATP-binding protein metN OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC03011C06SK OF2 Citrus clementina cDNA clone C03011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291610 ID=CX291610; Name=CX291610; organism=Citrus clementina; type=EST; length=697bp
AGGAGCTACCGAAGAGGAGATCATTGCGGCTACAGAAGCATCAAATGCAC
ACAACTTCATAAGTGCATTGCCACATGGCTACGAGACCAATGTTGGGGAA
CGAGGAGTGCAGCTATCCGGTGGGCAGAAGCAGAGAATTGCCATAGCAAG
AGCTGTATTAAAGAACCCAAAAATTCTTTTGCTTGATGAGGCAACAAGTG
CACTGGATGCAGAATCAGAGCGTGTAGTACAAGATGCATTGGAGAGAGTG
ATGGTTAACAGGACAACTGTGGTTGTAGCTCACCGCCTTACCACTATAAA
AAATGCTGATATAATAGCTGTAGTGAAGAATGGTGTGATTGCAGAGCAGG
GAAGCCATGATGCACTGATGAAAATCACTGATGGGGCTTATGCTTCCTTG
GTAGCTCTCCATGTGAGCTCATCATAAGGAGAAGCAGAGTGCGTTACCAA
TAGTTGAACACATGACTTCATCTGTCCCGGGGCCATCACCGTGGAACTGA
AATTTTTGTCAGCAGCAGTTTATTTTTGCCACACCTATTTACCTAGCTTT
AAAAGTAGGAACTTACTTACACTTTACCAATTTCAAGAAGGGAATTTGAG
AACTTTGACATTGTATGAATTTCCATTAAAAATTTTGAGCAATTACACAT
GTAAGTAATCCTTCAGAATTTTTATTTGTTAGTTTTCCTTTCTTTGC
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