CX291610

Overview
NameCX291610
Unique NameCX291610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN1_PSE14 (Methionine import ATP-binding protein metN 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=metN1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 352
            QLSGGQKQR+ IARA+   PKILL DEATSALD ++   V   L  +   +  T V++ H +  I+   D +AV+  GVI EQG
Sbjct:  141 QLSGGQKQRVGIARALATKPKILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDAGVIVEQG 224          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_LEUMM (Methionine import ATP-binding protein metN OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=metN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 355
            QLSGGQKQR+AIARA+  +P+IL+ DEATSALD  +   +   L+++      T V++ H +  +K  A+ +AV++NG I E+GS
Sbjct:  154 QLSGGQKQRVAIARALANDPEILISDEATSALDPRTTNQILALLKKLNQEFGLTIVLITHEMQAVKEVANKVAVMQNGEIIERGS 238          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_CLOD6 (Methionine import ATP-binding protein metN OS=Clostridium difficile (strain 630) GN=metN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   77 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 367
            G      ++   LSGGQKQR+AIARA+  NP++LL DEATSALD  + + +   LE +   +  T +VV H++  IK     +A+++NG + E G  + +
Sbjct:  125 GISEKKNDKPRNLSGGQKQRVAIARALALNPQVLLCDEATSALDPNTTKSILSLLEDINKKLGITIIVVTHQMEVIKQICGRVAIMENGEVLEVGDTEEI 224          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN2_OCEIH (Methionine import ATP-binding protein metN 2 OS=Oceanobacillus iheyensis GN=metN2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQG 352
            QLSGGQKQR+ IARA+  +PK+LL DEATSALD E+   +   L+ +   +N T +++ H +  I K  + +AV++ G + E+G
Sbjct:  140 QLSGGQKQRVGIARALANSPKVLLCDEATSALDPETTNQILSLLQDINEKLNLTIILITHEMHVIRKICNRVAVMEQGKVVEEG 223          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: CBIO1_MESFL (Cobalt import ATP-binding protein cbiO 1 OS=Mesoplasma florum GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   62 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALE--RVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 373
            SA   G E  + +  + LSGGQKQR+AIA A+  NP IL+ DEATS LD +  R +++ +   R  + +T + + H +  I NAD + V+  G + + G  + ++K
Sbjct:  257 SAKKVGMENFLDKEPLNLSGGQKQRVAIASALALNPDILIFDEATSMLDPKGNREIKEIMVELRDKMKKTIISITHDMDEILNADKVIVMNGGRMVKIGKPEEVLK 362          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: APRD_PSEAE (Alkaline protease secretion ATP-binding protein aprD OS=Pseudomonas aeruginosa GN=aprD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   41 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTV-VVAHRLTTIKNADIIAVVKNGVIAEQGSHDALM 370
            +  H  +  LP GY+T +G  G  LSGGQ+QRIA+ARA+   P +++LDE  S LD   E+ +  A++ +     TV ++ HR   +  AD +  +  G +   G  D ++
Sbjct:  445 AGVHELVLRLPQGYDTVLGVGGAGLSGGQRQRIALARALYGAPTLVVLDEPNSNLDDSGEQALLAAIQALKARGCTVLLITHRAGVLGCADRLLALNAGQLHLYGERDQVL 555          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 36/105 (34.29%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   53 NFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDAL 367
            N + A     +T V   GV  S GQ+Q +A+ARA+++  +I++LDE+T+++D  ++R +Q  L     + T + +AHR+ TI + D + V+ +G   E GS  +L
Sbjct: 1305 NSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSL 1409          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_SALEN (Methionine import ATP-binding protein metN OS=Salmonella enteritidis GN=metN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  107 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 352
            VQLSGGQKQR+ IARA+  +P +LL DE TSALD E+   +   L ++   +  T V++ H +  IK+  D +AV+  G + E G
Sbjct:  117 VQLSGGQKQRVGIARAIANHPDVLLCDEPTSALDLETSATILALLRQINAQLGITIVLITHEMNVIKSICDRVAVMSGGKVVESG 201          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_RHORT (Methionine import ATP-binding protein metN OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=metN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  110 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 352
            +LSGGQKQR+ IARA+   P +LL DEATSALD E+ + +   L+ +   +  T V++ H +  IK+ AD +AV+ +G + EQG
Sbjct:  140 ELSGGQKQRVGIARALASKPSVLLCDEATSALDPETTKSILALLKDINRRLGLTIVLITHEMHVIKDIADRVAVLDHGRVVEQG 223          
BLAST of CX291610 vs. ExPASy Swiss-Prot
Match: METN_RALSO (Methionine import ATP-binding protein metN OS=Ralstonia solanacearum GN=metN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 2
Query:   77 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQG 352
            G + +      Q+SGGQKQR+ IARA+   P +LL DEATSALD E+ R + D L ++   +  T V++ H++  IK   D +AV+  G + E G
Sbjct:  130 GLDAHKDRYPAQISGGQKQRVGIARALASQPDVLLSDEATSALDPETTRSILDLLRKINRELGLTIVLITHQMEVIKQVCDRVAVLDAGRVVELG 224          
The following BLAST results are available for this feature:
BLAST of CX291610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN1_PSE149.894e-1248.81Methionine import ATP-binding protein metN 1 OS=Ps... [more]
METN_LEUMM1.292e-1145.88Methionine import ATP-binding protein metN OS=Leuc... [more]
METN_CLOD61.292e-1139.00Methionine import ATP-binding protein metN OS=Clos... [more]
METN2_OCEIH1.292e-1144.05Methionine import ATP-binding protein metN 2 OS=Oc... [more]
CBIO1_MESFL1.292e-1136.79Cobalt import ATP-binding protein cbiO 1 OS=Mesopl... [more]
APRD_PSEAE1.292e-1134.23Alkaline protease secretion ATP-binding protein ap... [more]
ABC1_SCHPO1.292e-1134.29ATP-binding cassette transporter abc1 OS=Schizosac... [more]
METN_SALEN1.688e-1143.53Methionine import ATP-binding protein metN OS=Salm... [more]
METN_RHORT1.688e-1145.24Methionine import ATP-binding protein metN OS=Rhod... [more]
METN_RALSO1.688e-1141.05Methionine import ATP-binding protein metN OS=Rals... [more]

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Properties
Property NameValue
Genbank descriptionC03011C06SK OF2 Citrus clementina cDNA clone C03011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291610 ID=CX291610; Name=CX291610; organism=Citrus clementina; type=EST; length=697bp
AGGAGCTACCGAAGAGGAGATCATTGCGGCTACAGAAGCATCAAATGCAC
ACAACTTCATAAGTGCATTGCCACATGGCTACGAGACCAATGTTGGGGAA
CGAGGAGTGCAGCTATCCGGTGGGCAGAAGCAGAGAATTGCCATAGCAAG
AGCTGTATTAAAGAACCCAAAAATTCTTTTGCTTGATGAGGCAACAAGTG
CACTGGATGCAGAATCAGAGCGTGTAGTACAAGATGCATTGGAGAGAGTG
ATGGTTAACAGGACAACTGTGGTTGTAGCTCACCGCCTTACCACTATAAA
AAATGCTGATATAATAGCTGTAGTGAAGAATGGTGTGATTGCAGAGCAGG
GAAGCCATGATGCACTGATGAAAATCACTGATGGGGCTTATGCTTCCTTG
GTAGCTCTCCATGTGAGCTCATCATAAGGAGAAGCAGAGTGCGTTACCAA
TAGTTGAACACATGACTTCATCTGTCCCGGGGCCATCACCGTGGAACTGA
AATTTTTGTCAGCAGCAGTTTATTTTTGCCACACCTATTTACCTAGCTTT
AAAAGTAGGAACTTACTTACACTTTACCAATTTCAAGAAGGGAATTTGAG
AACTTTGACATTGTATGAATTTCCATTAAAAATTTTGAGCAATTACACAT
GTAAGTAATCCTTCAGAATTTTTATTTGTTAGTTTTCCTTTCTTTGC
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