CX291686

Overview
NameCX291686
Unique NameCX291686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.775e-37
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = -3
Query:  181 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDD 498
            ++KREL FKE+GQEYAQVLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPET R+NE  A   V+D
Sbjct:   20 EQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARINETDAFDDVED 125          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.019e-33
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = -3
Query:  175 KRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 492
            KRELI+KE+GQEYAQ+ +MLGNGR EA C DG KR+ HIRGK+ KKVW+G GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE  ++NE    G   D++
Sbjct:   23 KRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDED 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.966e-33
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  175 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 498
            +EKREL + E+GQ YAQV +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPET ++NE    G   +D+
Sbjct:   21 NEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDD 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  226 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 498
            D ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    5 DSRKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_METKA (Translation initiation factor 1A OS=Methanopyrus kandleri GN=eIF1A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = -3
Query:  193 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE-TTRLNEGIAAG 489
            +++   ++G+ +  V +MLGN R +  C+DG  R+  I GKM K+VWI  GD++LV   ++Q ++ADV  +Y   +   LK  G+L E  T+L E I  G
Sbjct:   11 KKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREGDVVLVKPWEFQPERADVTWRYTRVQVDWLKRKGKLDERVTKLLEEIIPG 110          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIK (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of CX291686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_DICDI5.775e-3770.75Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST1.019e-3363.21Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO2.966e-3362.96Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_HALMA5.816e-1337.36Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_METKA7.596e-1338.00Translation initiation factor 1A OS=Methanopyrus k... [more]
IF1A_SULIY1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIK1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionC04002C02SK FlavFr1 Citrus clementina cDNA clone C04002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291686 ID=CX291686; Name=CX291686; organism=Citrus clementina; type=EST; length=500bp
TTTTTTTTTAAACAGTAACCCGCTGATATTACATAAAACTAAGCATATCG
ATTTCATCATAAAATTAACAACAAAGAAAGCATGCATGGCATGCAGCAGA
AAAATATAAAAAGAGAAAGATTAGATCCTATCAATATCCTCATCCTCAAA
CTCAATATAATTATCGGGACCAGCTTCATCGTCGTCAACAATACCGGCAG
CAATCCCTTCGTTCAACCTAGTAGTCTCAGGCAATTCACCGTAAGCCTTG
AGCAAGCGGGCCTCATCAGGCATGTATTTCAAAATAACATCGGCTTTATC
GTCTTGATAATCTCTCAAACCGACAAGAATAATATCACCCGCACCAATCC
AAACCTTTTTGTGCATCTTACCACGGATGTGGCAGAGACGCTTGGCGCCG
TCGATGCACATGGCCTCGCATCGACCGTTCCCCAGCATCCGAAGCACCTG
CGCGTATTCTTGACCGTCTTCCTTGAATATCAGCTCGCGTTTCTCGTCGT
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