CX291689

Overview
NameCX291689
Unique NameCX291689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:30..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_CAPAN (Histone H3.3 OS=Capsicum annuum PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 8.858e-44
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_URECA (Histone H3 OS=Urechis caupo PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_TIGCA (Histone H3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_PLADU (Histone H3 OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_DROME (Histone H3 OS=Drosophila melanogaster GN=His3 PE=1 SV=4)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_DROHY (Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
The following BLAST results are available for this feature:
BLAST of CX291689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
H33_CAPAN4.697e-4598.91Histone H3.3 OS=Capsicum annuum PE=2 SV=3[more]
H33_ARATH4.697e-4598.91Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 ... [more]
H33A_LILLO8.858e-4495.65Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_URECA7.498e-4394.57Histone H3 OS=Urechis caupo PE=1 SV=2[more]
H3_TIGCA7.498e-4394.57Histone H3 OS=Tigriopus californicus PE=3 SV=2[more]
H3_PLADU7.498e-4394.57Histone H3 OS=Platynereis dumerilii PE=3 SV=2[more]
H3_DROME7.498e-4394.57Histone H3 OS=Drosophila melanogaster GN=His3 PE=1... [more]
H3_DROHY7.498e-4394.57Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2[more]
H3_CHITH7.498e-4394.57Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR7.498e-4394.57Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]

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Properties
Property NameValue
Genbank descriptionC04002C06SK FlavFr1 Citrus clementina cDNA clone C04002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291689 ID=CX291689; Name=CX291689; organism=Citrus clementina; type=EST; length=326bp
TGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAA
TGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCG
AGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGG
TGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTG
AAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCT
TTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAG
GATCCAAAGCCACGCGGTTCTTGCGC
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