CX291703

Overview
NameCX291703
Unique NameCX291703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   63 KRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   63 KRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   63 KRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.177e-21
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            KKTRH LP GF+K +VHNV ELE+LMM NR +CAEIAH  S+KKRK IVERA QL + VT   ARLRSQE E
Sbjct:   63 KKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.197e-18
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            KKT+H L +GF+KF+VHN+ E E+L+M N++Y AEIAHNVS+K RK IVERAAQL + VTN   RL S+E E
Sbjct:   64 KKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.348e-18
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 210
            KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.090e-17
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 210
            KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   58 KKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.429e-17
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 207
            KKTRH +P+G K F+V NV ++ELL+MHN+TY AEIAHNVS++KR EI+ RA QL V VTN  A++ ++
Sbjct:   62 KKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 KKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            K T+   P+GFK+FV+ NV ELE+L+M NR Y A I H VS K RK IVERAA+L++ VT   ARLRS+E E
Sbjct:   62 KATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of CX291703 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query:   91 TYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 216
            TYCAEIAHNVSTKKRKEIVERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
The following BLAST results are available for this feature:
BLAST of CX291703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL32_DROMD1.470e-2270.8360S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU1.470e-2270.8360S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF1.470e-2270.8360S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME6.177e-2169.4460S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE2.197e-1862.50Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32B_SCHPO8.348e-1862.8660S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32A_SCHPO1.090e-1762.8660S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32_NEUCR2.429e-1759.4260S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32_DICDI2.686e-1658.3360S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_MAIZE1.056e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionC04002D12SK FlavFr1 Citrus clementina cDNA clone C04002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291703 ID=CX291703; Name=CX291703; organism=Citrus clementina; type=EST; length=513bp
AAGAAAACACGCCACTATCTGCCCAATGGATTCAAGAAGTTTGTTGTGCA
CAATGTCAATGAACTGGAACTCTTGATGATGCACAACAGGACTTATTGTG
CTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAAGGAGATTGTCGAG
CGTGCTGCACAATTGGATGTTGTGGTCACCAACAAATTGGCCAGGTTGCG
CAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTGTGTTAGTGTTTGC
TTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATGGATGAACATTTCC
AGGGTTGAATTATGATGTATTTTCTATTTTTGTCACCTGAATGATATTTT
GAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTATGTCAACTTAGGAG
TTAAGGTTTATGGCCAAGCCTTTTATTAACATTGTTTTGCATATTTTGCC
GAAACTATTAGTGGGCAATGTTAAGCGTATGATGTTTAATAGCGTTAAAA
AAAAAAAAAAAAA
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