CX291726

Overview
NameCX291726
Unique NameCX291726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291726 vs. ExPASy Swiss-Prot
Match: MAN2_ORYSJ (Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa subsp. japonica GN=MAN2 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.652e-54
Identity = 103/209 (49.28%), Postives = 142/209 (67.94%), Query Frame = 2
Query:    2 VILSLVNNFKEYGGRPRYVEWARERGQSLK-NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYG-ESVPERQKYNPNN---TPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYK 613
            +ILSL NN   YGG+ +YV WA E G  L  + D F+ +  ++ Y+K ++K +L R N +TG+ Y+DDPTI AWELMNE RC +DPSG  LQ W++EM+A+VKSID  HLL VG EGFYG  S  E+   NP        G DFI N++I D+DFA++H+YP+ WL   + S + +L F+ RWI AH++D D  L+KP+L+ EFG S++
Sbjct:  149 LILSLANNLDAYGGKRQYVRWAWEEGVGLTASNDSFFFDPAIRDYFKVYLKTLLMRKNHLTGLEYRDDPTILAWELMNEPRCTSDPSGDTLQRWMEEMSAYVKSIDKKHLLTVGTEGFYGPTSSQEKLNINPGEWFPNNYGADFIRNSKIQDIDFASVHVYPDNWLQ--HASLDEKLKFMTRWITAHVEDGDGELEKPVLVTEFGLSHQ 355          
BLAST of CX291726 vs. ExPASy Swiss-Prot
Match: MAN6_ORYSJ (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.399e-53
Identity = 95/203 (46.80%), Postives = 140/203 (68.97%), Query Frame = 2
Query:    2 VILSLVNNFKEYGGRPRYVEWARERGQSLKNE-DDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNN--TPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFG 601
            +IL LVNN    GG+ +YV+WA+  G ++ N  D FY++  +K+YYK++VKA+LTR NS + + Y D+P IFAWELMNE RC ++ SG  LQ WI EMAA+VKS+D +HL+ VG EGFYG  + ER   NP      + +DFI N+ +  +DFA++H YP+ WLP  +  ++++  +++ W+ +H+ DS+ ILKKP+L  E G
Sbjct:  146 LILCLVNNLDNLGGKAQYVQWAQAAGANMTNSTDSFYSHPTIKRYYKDYVKAILTRRNSYSRIRYSDEPAIFAWELMNEPRCVSNSSGPYLQAWIAEMAAYVKSLDTNHLVTVGTEGFYGPGIAERLGVNPGEWAASLCSDFIQNSAVEHIDFASVHAYPDSWLPRASLEEKVR--YLSNWVDSHLNDSEQILKKPVLFTEVG 346          
The following BLAST results are available for this feature:
BLAST of CX291726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN2_ORYSJ1.652e-5449.28Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa... [more]
MAN6_ORYSJ1.399e-5346.80Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC04002G09SK FlavFr1 Citrus clementina cDNA clone C04002G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291726 ID=CX291726; Name=CX291726; organism=Citrus clementina; type=EST; length=617bp
TGTGATCCTAAGCTTAGTGAATAACTTCAAGGAGTATGGGGGAAGGCCAC
GTTATGTTGAATGGGCGAGAGAGCGTGGCCAGTCTTTGAAGAATGAGGAT
GACTTCTATACAAATGCTGTTGTCAAACAATACTACAAGAATCATGTTAA
GGCAGTGCTGACGAGAATCAACTCGATAACCGGCGTGGCATACAAGGATG
ATCCCACCATTTTTGCATGGGAACTCATGAACGAAGCTCGCTGCCCAACC
GATCCCTCTGGGACACTACTTCAGGAGTGGATTAAAGAAATGGCAGCGCA
TGTTAAGTCCATCGATAACCATCATCTGCTTGAAGTAGGTTTGGAAGGTT
TCTATGGGGAATCAGTACCAGAAAGGCAAAAATACAATCCCAACAACACT
CCTGTTGGTACTGATTTCATTACCAATAATCAGATCCCAGATGTTGATTT
CGCAACCATTCATATTTACCCCGAGCAATGGTTGCCACCAGGAAACACAA
GTGACGAAATTCAACTTGCATTTGTGAATAGATGGATCCAGGCTCATATC
CAGGACTCAGATTCAATTCTGAAGAAACCAATCCTCATTGGGGAGTTTGG
AAAGTCATATAAATATC
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