CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-----LFSENKREYNRRVREIVEQS 289
            FK  + F   YP +PP + F S M+HPNIY+DG +C+ IL           WSP   +  +L S+ SLL +PNP+SPAN +AA+     L+ E+   Y   V++ V++S
Sbjct:   50 FKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+ EY +R R
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 32/91 (35.16%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F    +   +YP++PP V+  ++++HPNI  DG++CL+IL+  W+P+ ++ +I+  +Q L  +PNP  P N EAA +   N+R++   V++
Sbjct:   73 FVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.589e-16
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:   54 FKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKE 144          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--------WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-----LFSENKREYNRRVREIVEQS 289
            FK  + F  +YP  PP + F S M+HPNIY DG +C+ IL           WSP   +  IL S+ SLL +PNP+SPAN +AA+     ++ E+   Y   V++ V++S
Sbjct:   50 FKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E
Sbjct:   54 FKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.295e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.295e-15
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F + +    DYP KPPT++F ++++HPNI  +DG+IC ++  + WSP   +  +LT+I+S+L DPNP++P  +E A+ F  ++  +N+  +E
Sbjct:   51 FSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKE 141          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+ A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+ A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC_ASFM23.407e-1639.45Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_MESAU4.449e-1640.22SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC12_DROME5.811e-1635.16NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC36_ARATH7.589e-1642.86Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC_ASFB79.912e-1639.45Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC35_ARATH9.912e-1645.24Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_MACFA1.295e-1542.86Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBCB_DICDI1.295e-1538.04Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBE2S_HUMAN1.691e-1539.36Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN1.691e-1539.36Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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