CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            +++ + F +D+P+ PP  +F   +FHPN+Y  G++CL +L     W P   +  +L  IQ LL  PN   PA +EA +++ +N+ EY +RV++
Sbjct:   58 YRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L L   ++YP  PP VRF+++++HPN+   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P +++ A+++ EN+ +     RE
Sbjct:   51 FHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANARE 141          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 253
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.919e-15
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KSNE 316
            FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+      K++E
Sbjct:   51 FKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADE 159          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC9_CAEEL2.884e-1535.48SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC13_SCHPO2.884e-1538.46Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UB2E3_MOUSE2.884e-1543.96Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN2.884e-1543.96Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN2.884e-1543.96Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBE2N_PONAB3.767e-1542.86Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE3.767e-1542.86Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN3.767e-1542.86Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN3.767e-1542.86Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2T_HUMAN4.919e-1536.70Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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