CX291887

Overview
NameCX291887
Unique NameCX291887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK+ KGNP PR+YY+CT A GC V K V+R ++D   ++TTY G H H
Sbjct:  373 DGYRWRKYGQKVVKGNPNPRSYYKCT-ANGCTVTKHVERASDDFKSVLTTYIGKHTH 428          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            +D   WRKYGQK  KG+P PR YYRC+ + GCP RKQV+R   D + L+ TY  +HNH
Sbjct:   70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNH 127          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK  K NP PR+YY+CT   GC V+KQVQR   D  +++TTY+G H H
Sbjct:   66 DGYRWRKYGQKAVKNNPFPRSYYKCT-EEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK+ KGNP PR+Y++CT  + C V+K V+R A++  +++TTY+G HNH
Sbjct:  308 DGYRWRKYGQKVVKGNPNPRSYFKCT-NIECRVKKHVERGADNIKLVVTTYDGIHNH 363          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D + ++TTYEG H H
Sbjct:  175 DGYRWRKYGQKAVKNSPFPRSYYRCTTA-SCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK+ K +  PR+YYRCT    C V+K+V+R +ED  ++ITTYEG HNH
Sbjct:  146 DGYKWRKYGQKVVKNSLHPRSYYRCTHN-NCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 WRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  +L+ TY   HNH
Sbjct:  220 WRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 WRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  +L+ TY   HNH
Sbjct:  222 WRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 274          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK  K +  PR+YYRCT  + C V+KQVQR +++ +I+ TTYEG HNH
Sbjct:   31 DGYRWRKYGQKSVKNSLYPRSYYRCTQHM-CNVKKQVQRLSKETSIVETTYEGIHNH 86          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.830e-12
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 ARGTDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            A  +D   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  + I TY   HNH
Sbjct:  125 ALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNH 185          
The following BLAST results are available for this feature:
BLAST of CX291887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
WRK34_ARATH1.656e-1357.89Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK69_ARATH2.824e-1355.17Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK45_ARATH2.824e-1357.89Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK10_ARATH2.824e-1354.39Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRK23_ARATH3.688e-1356.14Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK12_ARATH6.291e-1357.89Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK35_ARATH8.217e-1356.60Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK14_ARATH8.217e-1356.60Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK43_ARATH1.073e-1257.89Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK22_ARATH1.830e-1252.46WRKY transcription factor 22 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04006F03SK FlavFr1 Citrus clementina cDNA clone C04006F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291887 ID=CX291887; Name=CX291887; organism=Citrus clementina; type=EST; length=518bp
GCACGAGGCACTGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGC
TAAAGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACAATGGCAGTTG
GTTGCCCAGTTCGTAAGCAAGTTCAACGTTGTGCGGAAGATAGGACGATT
TTGATAACAACTTATGAAGGCAATCACAATCATCCCTTACCTCCTGCTGC
AATGGCAATGGCATCAACAACAACAGCTGCTGCTAGCATGTTACTTTCAG
GATCAATGTCGAGTGCAGATGGGATAATGAACCCCAATTTGCTAGCCAGA
GCTATTCTTCCTTGCTCATCAAGCATGGCTACGATTTCAGCTTCTGCCCC
ATTTCCTACAGTTACATTAGACCTTACTCATTCACCAAACCCTTTACAAC
TCCAAAGGCAAGCAGCTCAATTCCAAGTCCAATTTCCAGGCCAGCCACAA
AATCTTGCCTCTGTCACAAACACTCAATTGCCTCAAGTTTTTGGTCAGGC
CCTTTACAATCAATCAAA
back to top