CX291891

Overview
NameCX291891
Unique NameCX291891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 54/164 (32.93%), Postives = 70/164 (42.68%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   59 GTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 54/164 (32.93%), Postives = 70/164 (42.68%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   59 GTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 53/164 (32.32%), Postives = 70/164 (42.68%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   60 GTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 56/164 (34.15%), Postives = 73/164 (44.51%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   60 GTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 52/164 (31.71%), Postives = 70/164 (42.68%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   60 GTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 49/164 (29.88%), Postives = 69/164 (42.07%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 508
            GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C T ++Y++ FCP
Sbjct:   60 GTNSGRIWGRTGCSFNG-GSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CX291891 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.093e-11
Identity = 30/47 (63.83%), Postives = 32/47 (68.09%), Query Frame = 2
Query:   17 GTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 157
            GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   57 GTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
The following BLAST results are available for this feature:
BLAST of CX291891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1C_HORVU3.822e-1732.93Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU3.822e-1732.93Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
RST1_AVESA2.739e-1532.32Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA6.102e-1534.15Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA6.102e-1531.71Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST4_AVESA1.662e-1229.88Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR3_JUNVI4.093e-1163.83Pathogenesis-related protein (Fragment) OS=Juniper... [more]

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Properties
Property NameValue
Genbank descriptionC04006F07SK FlavFr1 Citrus clementina cDNA clone C04006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291891 ID=CX291891; Name=CX291891; organism=Citrus clementina; type=EST; length=557bp
GCACGAGGCCGAGCCAGGCACAAAAGCAGCCCGCATTTGGGCTCGAACCA
AATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTGACTGT
AACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACCTTGGC
CGAGTACGCGTTGAAGCAATTCAATGACATGGATTTCATTGACATGTCCA
ACATTGACGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTCCCTCA
TGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGCCCGAA
TGAATTGAAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTTCAAGA
CCGACGAGTACTGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCC
AAGTTTTTCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGA
CGCTACCAGCACATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTAT
TCTGCCCCTGAAGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACT
ATACGAC
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