CX291904

Overview
NameCX291904
Unique NameCX291904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.496e-50
Identity = 104/190 (54.74%), Postives = 127/190 (66.84%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPK-VIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGA--------PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EI GVVTEVG  V++FK GD+VGVGCMV +C  C+SC    ENYC   V+ TY S   DGT TYGGYSD +V  + FVVR P  A        PLD+ APLLCAG+TVY+P+R +GL + G                KFA+A G++VTVISTSP K+ EA+ERLGAD F+VS +  EM+AAMGTM GII+
Sbjct:   83 EITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIIN 272          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.354e-50
Identity = 95/181 (52.49%), Postives = 126/181 (69.61%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            E+VG+VTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG                K AKA G+ VTVIS+S  KK EA+E LGAD++LVS+D ++M  A  ++D I+D
Sbjct:   70 EVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMD 250          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.354e-50
Identity = 95/181 (52.49%), Postives = 126/181 (69.61%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            E+VG+VTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG                K AKA G+ VTVIS+S  KK EA+E LGAD++LVS+D ++M  A  ++D I+D
Sbjct:   70 EVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMD 250          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.426e-50
Identity = 100/181 (55.25%), Postives = 121/181 (66.85%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EIVGVVT VG+ V+KFK GD VGVG  V SCR+CDSC    ENYCP +++T     + G  T GG+SD MV  + +VVR+P   P D  APLLCAG+TVYSP+  YGL+ PG                KF KA G+KVTVIS+SP+K+ EA+ RLGAD+FL SRD + M AA  TMDGIID
Sbjct:   68 EIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMDGIID 248          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.686e-49
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EIVGVV  VG+ V++FK GD VGVG  V SCR+CDSC    ENYCP +++T     + G  T GG+SD MV  + +V+R+P   P D  APLLCAG+TVYSP+  YGL+ PG                KF KA G+KVTVIS+SP+K+ EA+ERLGAD+FL SRD + M AA  TMDGIID
Sbjct:   68 EIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIID 248          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.211e-49
Identity = 98/187 (52.41%), Postives = 127/187 (67.91%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEG------APLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EIVGVV EVGS V++F  GD VGVG +  +CR+C +C    ENYC  ++ ++ +   DG   +GG+S+  V ++ +VVRIP G      APLD  APLLCAG+TVY P+R  GLD+PG+               KF KA GVKVTVISTSP K++EAVERLGAD+FL+S + ++M+AA GTMDGIID
Sbjct:   68 EIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVISTSPWKEAEAVERLGADAFLLSTNAEQMKAAAGTMDGIID 254          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.072e-48
Identity = 100/184 (54.35%), Postives = 124/184 (67.39%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EI GVVT+VG+ V+ FKVGD+VGVGC+  SC  C+ C    ENYC KV +TY   + DG+ITYGGYS  +VA + FVVRIP+  PLDA APLLCAGITVYSP++ +G+   D  G                KF KA G+ VTVISTSP+K+ EA E L AD+F+VS DQ +MQA   ++D IID
Sbjct:   71 EITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSLDYIID 254          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.981e-46
Identity = 96/181 (53.04%), Postives = 116/181 (64.09%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            E+VG V EVG  VSKFKVGD VGVG +VGSCR+C  C  D+E YC K I      Y DG  T GG++ +MV D+ FVV+IPEG   +  APLLCAGITVYSPL  +G  + G+               K AKAMG  VTVIS+S  K+ EA+E LGAD +LVS D D+MQ A  ++D IID
Sbjct:   70 EVVGEVVEVGPDVSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEASDSLDYIID 250          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.506e-46
Identity = 90/181 (49.72%), Postives = 120/181 (66.30%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            EI GVVTEVG+ V  FKVGD VGVG  V SCR C++C   LENYC + + T+     DGT+T GGYS  +V  E +  +IP+G PL+  APLLCAGITVYSP+  + +++PG                KF KA G+KVTVISTS SK+ EA++ LGAD+F+VS D+++M+    +++ IID
Sbjct:   70 EIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLNFIID 250          
BLAST of CX291904 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.497e-46
Identity = 95/181 (52.49%), Postives = 117/181 (64.64%), Query Frame = 3
Query:    9 EIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 551
            E+VG V EVGS VSKF VGD VGVG +VG C SC  C+ +LE YC K I +Y   Y DG  T GG++DTM+ ++ FVV+IPEG  ++  APLLCAG+TVYSPL  +GL   G+               K AKAMG  VTVIS+S  KK EA+E LGAD ++VS D  EMQ    ++D IID
Sbjct:   71 EVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLADSLDYIID 251          
The following BLAST results are available for this feature:
BLAST of CX291904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
CADH7_ORYSJ1.496e-5054.74Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH_PINTA4.354e-5052.49Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA4.354e-5052.49Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CAD8D_ORYSJ7.426e-5055.25Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CAD8A_ORYSJ3.686e-4954.14Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH9_ORYSJ8.211e-4952.41Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH6_ORYSJ1.072e-4854.35Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH1_TOBAC4.981e-4653.04Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH1_ORYSJ6.506e-4649.72Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ARATH8.497e-4652.49Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04006G09SK FlavFr1 Citrus clementina cDNA clone C04006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291904 ID=CX291904; Name=CX291904; organism=Citrus clementina; type=EST; length=552bp
GCACGAGGGAGATTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGT
AAATTCAAAGTCGGAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATG
CCGCTCTTGTGATAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAG
TTATAATGACCTATGCCAGCAAGTACCATGATGGAACCATCACATACGGA
GGCTACTCTGACACTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCC
TGAAGGCGCACCACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCA
CAGTCTACAGTCCGTTGAGATTCTATGGACTCGACAAGCCTGGTATGCAT
GTGGGTGTTGTCGGCTTGGGCGGTCTAGGCCATGTCGCTGTCAAATTCGC
AAAGGCTATGGGGGTTAAGGTGACTGTGATCAGTACCTCCCCTAGCAAGA
AGAGTGAAGCCGTTGAACGTCTTGGCGCTGATTCCTTTTTGGTCAGTCGT
GATCAAGATGAGATGCAGGCTGCCATGGGCACAATGGATGGTATCATCGA
TA
back to top