CX291905

Overview
NameCX291905
Unique NameCX291905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            +GGS IGG+KETQEM+DF  KHNI ADIE+I  + +NTAMERL KADV+YRF
Sbjct:  297 IGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRF 348          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  263 FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            FSLV  + R + GS IGG+ +TQEMI+ AAKH + ADIEVI A+ VNTAMERLAKADVRYRF
Sbjct:  292 FSLVHGN-RTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRF 352          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            +GGS  GGLKETQEM+DF  KHNI A+IE+I  + +NTA+ERL+KADV+YRF
Sbjct:  290 IGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRF 341          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  260 LFSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            +FSLV    + VGGS IGG+KETQEM++F AKH I +DIE+I  + +N+AM+RLAK+DVRYRF
Sbjct:  284 IFSLVLGR-KMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRF 345          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  263 FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            F+LV ++ + + GS IGG+ +T EMID AAKH + A+IEVI A+YVNTAMERLAKADVRYRF
Sbjct:  282 FALVASN-KTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRF 341          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  263 FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            F+LV    + + GS +G + ETQEMIDFAA+H + ADIE+I A+ VNTAMERLAK DVRYRF
Sbjct:  308 FALV-GGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRF 368          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  197 YQLQRPHTTSHYIRGSQSLVLL--FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            + L +P     ++ G    + L  +++VP   +G+ G+ +GG+++ Q M+DFA +H I A++EVI  +YVNTAMERL K DVRYRF
Sbjct:  338 FSLMKPMAQMVFVGGPTRPLELPAYAIVPGG-KGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRF 422          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.328e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            VGGS IGG+KETQEM++F AKH I +DIE+I  + +N+AM+RL K+DVRYRF
Sbjct:  293 VGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRF 344          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.328e-13
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  263 FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            +++VP   +G+ G+ +GG+++ Q M+DFA +H I A++EVI  +YVNTAMERL K DVRYRF
Sbjct:  359 YAIVPGG-KGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRF 419          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  239 GSQSLVLLFSLVP--NSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            GS    +  +L P  +  + V GS+IGG+++TQEM+DFA +H + A++EVI    VN AMERL K DVRYRF
Sbjct:  279 GSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRF 350          
The following BLAST results are available for this feature:
BLAST of CX291905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MTDH_MEDSA6.066e-1571.15Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH3_ORYSJ6.066e-1569.35Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH1_STYHU5.135e-1467.31Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH2_ARATH5.135e-1461.90Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH5_ORYSJ6.707e-1466.13Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH7_ORYSJ8.759e-1462.90Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CAD8C_ORYSJ1.951e-1343.02Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CADH3_ARATH3.328e-1365.38Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CAD8B_ORYSJ3.328e-1353.23Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH9_ORYSJ7.415e-1350.00Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC04006G10SK FlavFr1 Citrus clementina cDNA clone C04006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291905 ID=CX291905; Name=CX291905; organism=Citrus clementina; type=EST; length=448bp
GGGTTTTTTTTTTTTTTTTTTAACAGAGTGAAAATGGTAGAATAGCATGT
TTTCGGAAAACTAAGGGCATACATCATCTCACAAGTTTTGCCAACATAGA
ATTCATCACGATATGTTCCAGTTCGATTATAAAATATACAAACTTTATTC
AAGTAGTAGTACCATCTGCACACTCAACCCAACAACAAAAGGAGCTTATC
AGTTACAGCGTCCACACACTACATCACACTACATCCGCGGGAGTCAGTCC
CTTGTACTGCTTTTTAGCCTCGTGCCGAATTCGGCACGAGGAGTTGGTGG
CAGTCTCATTGGGGGGTTGAAGGAGACTCAAGAGATGATTGATTTTGCAG
CAAAACACAACATCAGAGCTGATATTGAGGTCATACCGGCCAACTATGTG
AACACAGCCATGGAGCGCCTTGCTAAAGCCGATGTTAGATATCGCTTT
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