CX291915
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 9.470e-42 Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449 K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Y LE+KRKE++++ Y +KKQL +LR +AEK E+K+ ++L Sbjct: 51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 167.548 bits (423), Expect = 2.755e-41 Identity = 79/146 (54.11%), Postives = 103/146 (70.55%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449 K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Y LE+KRKE++++ Y +KKQ+ +LR +AEK E+K+ ++L Sbjct: 51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 3.598e-41 Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEK 425 K+K+ FL+KRMNT P GP HFR+PA+I WRT+RGMIPHKT +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRLA+EVGW + D + LE+KRK +S Y RKK L LRAKA K Sbjct: 50 KLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40 Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449 K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++GVP PYDK KRMV+P ALK++RL+ K+ LLGRLA EVGW Y LE+KRKE++++ Y +KK + KL AEK E + +L Sbjct: 37 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34 Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNKLRAKAEKVAE 419 K+K+M FLRKR N P+ GP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Y D +R+LE KRK +S +AYE+K K++ K EKVA+ Sbjct: 53 KLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITK--ESGEKVAK 189
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34 Identity = 63/133 (47.37%), Postives = 93/133 (69.92%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 410 K+K++ +LRKR N P+ GP HFRAP++IF++ VRGMIPHKT ++G+P+PYDK +R+V+P A++VL L+ KYC +GRL+ EVGW+Y D I+ LE+KRK + +V + ++L KL KA + Sbjct: 53 KIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARE 185
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.912e-34 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464 K+KYM FLRKR N P+ G H+RAP KIFWRTVRGM+PHKT YEGVPA Y K K + P A + RLQ K+C++GRL+ EVGW + D + +LE KRK + +E+KK+++KL +A+K A K+ I+ + Y Sbjct: 52 KLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34 Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAE 419 K+KY +LRK P+ G P HFRAP++IF++ VRGMIPHKT +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Y D + LE++RK + YERKK + ++A+K A+ Sbjct: 52 KLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 4.261e-34 Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNK 389 K+K+M FLRKR N P+ GP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Y + +R+LE KRK ++ +VAYERK K++ K Sbjct: 53 KLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITK 181
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.371e-32 Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 3 Query: 12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLD 443 K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S Y+ K AK +K+A K S ++ Sbjct: 52 KLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAK------LAKQKKIASAKAASSVN 189 The following BLAST results are available for this feature:
BLAST of CX291915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291915 ID=CX291915; Name=CX291915; organism=Citrus clementina; type=EST; length=490bpback to top |