CX291915

Overview
NameCX291915
Unique NameCX291915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 9.470e-42
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:   51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 2.755e-41
Identity = 79/146 (54.11%), Postives = 103/146 (70.55%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQ+ +LR +AEK  E+K+    ++L
Sbjct:   51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.598e-41
Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEK 425
            K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRLA+EVGW + D +  LE+KRK +S   Y RKK L  LRAKA      K
Sbjct:   50 KLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRLA EVGW Y      LE+KRKE++++ Y +KK + KL   AEK  E  +     +L
Sbjct:   37 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNKLRAKAEKVAE 419
            K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y D +R+LE KRK +S   +AYE+K K++ K     EKVA+
Sbjct:   53 KLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITK--ESGEKVAK 189          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 63/133 (47.37%), Postives = 93/133 (69.92%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 410
            K+K++ +LRKR N  P+ GP HFRAP++IF++ VRGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRL+ EVGW+Y D I+ LE+KRK + +V  +  ++L KL  KA +
Sbjct:   53 KIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARE 185          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.912e-34
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A +  RLQ   K+C++GRL+ EVGW + D + +LE KRK +    +E+KK+++KL  +A+K A  K+     I+  + Y
Sbjct:   52 KLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAE 419
            K+KY  +LRK     P+ G P HFRAP++IF++ VRGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Y D +  LE++RK +    YERKK   +  ++A+K A+
Sbjct:   52 KLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.261e-34
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNK 389
            K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y + +R+LE KRK ++  +VAYERK K++ K
Sbjct:   53 KLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITK 181          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.371e-32
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLD 443
            K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K       AK +K+A  K  S ++
Sbjct:   52 KLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAK------LAKQKKIASAKAASSVN 189          
The following BLAST results are available for this feature:
BLAST of CX291915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL13A_RAT9.470e-4254.7960S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE2.755e-4154.1160S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_CYAPA3.598e-4157.2560S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_SALTR1.786e-4053.4260S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_SPOFR1.121e-3452.5260S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_DROME1.464e-3447.3760S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CAEEL1.912e-3446.3660S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL16_NEUCR2.498e-3450.3660S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_CHOPR4.261e-3453.4960S ribosomal protein L13a OS=Choristoneura parall... [more]
RL16A_SCHPO1.371e-3246.5360S ribosomal protein L16-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC04006H12SK FlavFr1 Citrus clementina cDNA clone C04006H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291915 ID=CX291915; Name=CX291915; organism=Citrus clementina; type=EST; length=490bp
TCGGCACGAGGAAAATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAAC
ACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTT
CTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAAGCGTGGAGCTG
CAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTGCACCTTATGAC
AAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCA
GAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATCTGAGGTTGGAT
GGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGAGAAAGGAGAGG
TCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAACTTAGGGCTAA
GGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATTGGACATCCTTG
CTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAAT
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