CX291915

Overview
NameCX291915
Unique NameCX291915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.053e-32
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLD 443
            K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K       AK +K+A  K  S ++
Sbjct:   52 KLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAK------LAKQKKIASAKEASPVN 189          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.822e-31
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK----KQLNKLRAKAEKVAEEKL 428
            K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRL+SEVGW Y + + +LE++RK +S   Y+ K    K +N   AK +    EKL
Sbjct:   52 KLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV--AKTKSSVNEKL 192          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.188e-30
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEE 422
            K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK RS   Y +K+   K  + A   A E
Sbjct:   50 KLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 186          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.188e-30
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEE 422
            K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK  S   Y +K+   K  A A   A E
Sbjct:   51 KLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAE 187          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.852e-29
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 410
            K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    KY +L RL+ EVGW Y   + +LE +RK+RS   Y +   +   R +A K
Sbjct:   51 KLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 55/91 (60.44%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 284
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:   47 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  120 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 410
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K+ LLGR A EV W Y      LE+KRKE++++ Y +KKQL +LR +AEK
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEK 97          
The following BLAST results are available for this feature:
BLAST of CX291915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL16B_SCHPO3.053e-3246.5360S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16C_SCHPO9.822e-3146.1560S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL16B_YEAST2.188e-3045.2660S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL16A_YEAST2.188e-3045.9960S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL13A_DICDI1.852e-2946.6260S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL13A_PIG5.045e-2760.4460S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN1.019e-1948.45Putative 60S ribosomal protein L13a-like MGC87657 ... [more]

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Properties
Property NameValue
Genbank descriptionC04006H12SK FlavFr1 Citrus clementina cDNA clone C04006H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291915 ID=CX291915; Name=CX291915; organism=Citrus clementina; type=EST; length=490bp
TCGGCACGAGGAAAATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAAC
ACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTT
CTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAAGCGTGGAGCTG
CAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTGCACCTTATGAC
AAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCA
GAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATCTGAGGTTGGAT
GGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGAGAAAGGAGAGG
TCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAACTTAGGGCTAA
GGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATTGGACATCCTTG
CTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAAT
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