CX291958

Overview
NameCX291958
Unique NameCX291958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length273
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.134e-25
Identity = 50/88 (56.82%), Postives = 70/88 (79.55%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            TG+  KITITNDKGRLSK+EI++MV EAEKYKAEDE    +++AKN LE+YAY++RN++ D  +  K+D +DK+ I+ A+ + I+WLD
Sbjct:  493 TGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLD 580          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TG+  KITITNDKGRLSK+EIEKMV EAEK+K EDE+   +V+AKN LE+YAY+++NT+ +E+  SKLD ++ +++  A D+ I WLDS
Sbjct:  493 TGKTQKITITNDKGRLSKEEIEKMVSEAEKFKEEDEKEASRVQAKNQLESYAYSLKNTLGEEQFKSKLDASEIEEVTKAADETIAWLDS 581          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TG+  KITITNDKGRLSK+EI+KMV EAEK+K EDE+   +V+AKN LE+YAY+++NT+ D ++  K+   DK+K+  AID+ I WLD+
Sbjct:  494 TGKTQKITITNDKGRLSKEEIDKMVSEAEKFKEEDEKEAARVQAKNQLESYAYSLKNTINDGEMKDKIGADDKEKLTKAIDETISWLDA 582          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 50/90 (55.56%), Postives = 73/90 (81.11%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            ++G++NKITITNDKGRLSK+EIE+MVQEAE+YKA+DE  ++KV AKN LE+ A+NM++TV+ + +  K+   D+KKI D  +Q I W+++
Sbjct:  496 SSGKQNKITITNDKGRLSKEEIERMVQEAERYKADDEAQREKVSAKNTLESIAFNMKSTVEGDNLKDKISEDDRKKIVDKCNQTISWMEN 585          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.035e-24
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TG KNKITITND+ RLS ++IE+M+ +AEK+  +D++ K K EA+N LE+YAYN++N ++D EK+G KLD  DKK IE+A+++AI WL S
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGS 612          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.035e-24
Identity = 47/90 (52.22%), Postives = 73/90 (81.11%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            +TG +NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + K+ AKN+LE+ A+N++++ +D+ +  K+   D+K++ +  D+ I WL++
Sbjct:  496 STGNENKITITNDKGRLSKEDIERMVQEAEKYKAEDEQQRDKIAAKNSLESLAFNLKSSAQDDSLKDKISQEDRKRVVEKCDETIAWLEN 585          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.035e-24
Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            T + NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++  KN LE+YAY++RN+++  K+  KL+  DK+K++  ID+ +QWLD
Sbjct:  494 TRKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRIRPKNGLESYAYSLRNSLRHSKVDEKLEAGDKEKLKSEIDKTVQWLD 581          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24
Identity = 46/89 (51.69%), Postives = 73/89 (82.02%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TG++N+I +TNDKGRLS+ EIE+MV+EA KY+AED++  ++++AKN LENYA++M+N V D  +  K++ ADKK I  A+++A++WL++
Sbjct:  498 TGKRNQIVLTNDKGRLSRAEIERMVREAAKYEAEDKDQVRQIDAKNGLENYAFSMKNAVNDPNVAGKIEEADKKTITSAVEEALEWLNN 586          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24
Identity = 47/89 (52.81%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            +TG++NKITIT DKGRLSK+EIE+MV +AEK+K EDE+ + +V AKN LE+YA++M++TV+DEK+  K+  +D+++I +  ++ ++WLD
Sbjct:  496 STGKQNKITITRDKGRLSKEEIERMVNDAEKFKQEDEKQRDRVAAKNGLESYAFSMKSTVEDEKVKEKIGESDRRRIMEKCEETVKWLD 584          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.471e-24
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TG KNKITITND+ RLS ++IE+M+ +AEK+  +D++ K+K EA+N LE+YAY+++N + D EK+G KLD  DKK IE+A+D+AI WL S
Sbjct:  523 TGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAVDEAISWLGS 612          
The following BLAST results are available for this feature:
BLAST of CX291958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
HSP71_SCHPO9.134e-2556.82Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP72_CANAL1.193e-2458.43Heat shock protein SSA2 OS=Candida albicans GN=SSA... [more]
HSP71_CANAL1.193e-2457.30Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HSP70_PLEWA1.193e-2455.56Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP7C_CAEEL2.035e-2456.67Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP71_ORYLA2.035e-2452.22Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_AJECA2.035e-2455.68Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]
HSP70_TRYCR2.658e-2451.69Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HSP70_ECHGR2.658e-2452.81Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP7C_CAEBR3.471e-2456.67Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]

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Properties
Property NameValue
Genbank descriptionC04007D12SK FlavFr1 Citrus clementina cDNA clone C04007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291958 ID=CX291958; Name=CX291958; organism=Citrus clementina; type=EST; length=273bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAA
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