CX292105

Overview
NameCX292105
Unique NameCX292105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CHLL2 (10 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            ++KPL DRV+VK    EEKT GG+F+P T + KPQ GEVVAVG GK     + LD+ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEVNVEGEDYLIMRESDIFAILD 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GEVVAVG GK     + L++ VK G++V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            I+PL DR++VK    E KT GG+F+P TA+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++ +G  HLILRE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  +   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV+++    EEKT  GI LP TA+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  +LILRE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +++PL DR+LVK    E KT GGIF+P TA+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            ++P+ DR++VK    E KT GGI++P TA+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  260 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 529
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G ++++L E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99          
The following BLAST results are available for this feature:
BLAST of CX292105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 497
Match NameE-valueIdentityDescription
CH10_CLOPE3.154e-2051.6110 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP13.154e-2051.6110 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CHLL23.154e-2051.0610 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH10_PELPB4.119e-2050.5410 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_MYXXD4.119e-2049.4610 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]
CH10_CLOPS4.119e-2050.5410 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_BACHD4.119e-2053.2610 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_GEOSL5.380e-2048.9410 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF5.380e-2049.4610 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_CYAA55.380e-2050.5510 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]

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Properties
Property NameValue
Genbank descriptionC04010E09SK FlavFr1 Citrus clementina cDNA clone C04010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292105 ID=CX292105; Name=CX292105; organism=Citrus clementina; type=EST; length=587bp
TAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATC
AGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAG
CTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGA
TGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCA
GCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCT
CCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAAT
CAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAG
CTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAG
ACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGT
CATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATC
ATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAA
ATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCA
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