CX292122

Overview
NameCX292122
Unique NameCX292122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length257
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.009e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    4 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRASNDQ 237
            +P+  + L LGAD+V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR    Q
Sbjct:  258 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQ 336
[Close]
BLAST of CX292122 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 222
            ATP+ Q+ L LG D+V HSATK++ GH+D++ G ++ G  K L  Q++ L + +G    P  +++++RG+KTL +R
Sbjct:  183 ATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPFDSFMVLRGLKTLAIR 258
The following BLAST results are available for this feature:
BLAST of CX292122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
METC_ARATH2.009e-1144.30Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
METC_COXBU5.846e-1140.79Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]

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Properties
Property NameValue
Genbank descriptionC04010G06SK FlavFr1 Citrus clementina cDNA clone C04010G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292122 ID=CX292122; Name=CX292122; organism=Citrus clementina; type=EST; length=257bp
GCCACACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTCCT
GCACTCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGA
GCATTAGTGGTTCAGGGAAGTTAGTTACACAAATTCGTAATTTGCATCAT
GTTTTGGGTGGTGCTCTCAACCCGAATGCCGCATATTTGATCATTCGAGG
CATGAAGACATTGCATCTTCGTGCCTCAAATGATCAAATATGCGGCATTG
GGGGCAT
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