CX292145

Overview
NameCX292145
Unique NameCX292145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 77/208 (37.02%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 77/208 (37.02%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 77/208 (37.02%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K++LD LG M + EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLF+IP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T+++P+L  ++  + VHPLLLM P A+ A  A++LP GTP N + F +G I I+ M   G
Sbjct:  283 IKQKLDELGKMKYEEKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFVIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 89/227 (39.21%), Postives = 132/227 (58.15%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWG-ALFNDRAG-----DGTASVVMATLLFIIPSM--------KQKGE-----KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +K +  +LGPM+FAEK V  +F +L+ LW TR      PGWG   F ++ G     DGT ++ ++ ++FIIPS         K+ G+      ++ W     K+PWNI++LLG GFA+A G   SGL+  L   L  L+  P  A   I+ L+ AI TE TSN ATTTL +P+L  +A+ + +HPL +M+P  + A  AF+LP  TP N + F+ G +++ DM + G
Sbjct:  310 IKTQHRLLGPMSFAEKAVTFLFVLLVVLWFTRE-PGFFPGWGDTAFANKKGQSMVSDGTVAIFISLIMFIIPSKIPGLTEDPKKPGKLKAPPAILTWKTVNDKMPWNILILLGGGFALAKGSEESGLSKWLGDKLTPLQHVPPSATVLILSLLVAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAG 535          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.218e-36
Identity = 88/227 (38.77%), Postives = 130/227 (57.27%), Query Frame = 1
Query:   43 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRA------GDGTASVVMATLLFIIPS----MKQKGEK---------LMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            ++ E  +LGPM FAEK +  +F +L+ LW TR       GWG L    A       DGT ++ +  ++FIIPS    + Q  E          L+DW    +K+PWNI+LLLG G+A+A G   SGL++ L   L  L++ P  AIA I+ L+ A  TE TSN ATTT+ +P+L  +A+ + +HPL +M+P  +    AF+LP  TP N + F+ G +++ DM + G
Sbjct:  315 IQTEHRLLGPMTFAEKAISILFVILVLLWFTRE-PGFFLGWGNLAFPNAKGESMVSDGTVAIFIGIIMFIIPSKFPGLTQDPENPGKLKAPLGLLDWKTVNQKMPWNIVLLLGGGYALAKGSERSGLSEWLGNKLTPLQSVPAPAIAIILSLLVATFTECTSNVATTTIFLPILASMAQAICLHPLYVMLPCTLATSLAFMLPVATPPNAIVFSFGDLKVLDMARAG 540          
The following BLAST results are available for this feature:
BLAST of CX292145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SDCS_STAAN1.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM1.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC1.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA81.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA31.636e-3637.50Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW2.137e-3637.02Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS2.137e-3637.02Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB2.137e-3637.02Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A2_MOUSE2.137e-3639.21Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A2_HUMAN6.218e-3638.77Solute carrier family 13 member 2 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC04011A10SK FlavFr1 Citrus clementina cDNA clone C04011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292145 ID=CX292145; Name=CX292145; organism=Citrus clementina; type=EST; length=729bp
CTCGTGCGATTCGGCACGAGGGAGTATTTGGACAAAGCAAATCTCAAGAG
AGAGCTTGACATGTTAGGTCCAATGGCTTTTGCTGAAAAGATGGTACTAG
CTGTATTTGGGATGCTAATAGCATTGTGGATGACAAGATCAATAACAGAT
GACATTCCAGGTTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAAC
TGCTAGTGTTGTGATGGCAACATTGTTGTTCATAATTCCGAGCATGAAGC
AAAAGGGAGAAAAATTGATGGATTGGAACAAATGCAAGAAGCTACCTTGG
AACATTATATTGCTTTTAGGGGCTGGCTTTGCTATAGCTGATGGAGTCAG
GACTAGTGGTCTTGCTGATGATCTATCAAAAGCATTGGATTTCCTGGAGG
CAGCGCCCTATTTAGCCATTGCACCCATCGTATGTCTGATTAGCGCGATT
ATTACTGAATTCACATCAAATAATGCCACAACAACCCTCGTTGTTCCACT
TCTGATCCAAATAGCAAAAACTATGCATGTTCATCCATTGCTTCTTATGG
TTCCTGGAGCAATTGGAGCACAATTTGCTTTCTTGTTGCCGACTGGAACC
CCTTCAAATATTGTTGGATTCACAACCGGGCACATCGAAATTCAAGATAT
GATCAAGACAGGGCTGCCCCTTAGATTGCTGGCATTGCTGCTCTGGCCTT
TCTATGCCTACACTGGTGCTTATGTTTTT
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