CX292145

Overview
NameCX292145
Unique NameCX292145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 60/223 (26.91%), Postives = 108/223 (48.43%), Query Frame = 1
Query:   19 REYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRA-GDGTASVVMATLLFIIPSM--------------KQKGEKLMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIE 639
            R+ ++    +R +D LGPM+  E  +   F  +I L +TR     +PGW  L N +  G  +    +  L+F +P+                Q  + ++ W    + +PW ++ LLG GFA+A   R +GL   +SKA+  L   P + +  I  +++   + F +N     +V+P+L +++  + +HPL+L +P  +G    + LP  TP N +     HI+
Sbjct:  292 RKLMEDVLRQRHID-LGPMSCHEIQMAIAFAFMIVLLITRK-PGFVPGWSDLINRKVVGSASGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWGLLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFFSAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTPPNAIVTQYAHIK 512          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  298 WNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            W +++L G G  ++  ++ SG +  L+ ++ F+ +   +  I  +V      +TEFTSN A+  L+VP+ I IA+++ +  + L +   IGA  AF+LP  TP N + F +G ++  +M+K G
Sbjct:  318 WGVLMLFGGGLTLSAVLKDSGASKILADSIVFMIDGQHFYLIGLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLPVATPPNAIVFGSGQVKQSEMVKVG 440          
BLAST of CX292145 vs. ExPASy Swiss-Prot
Match: Y672_METJA (Uncharacterized transporter MJ0672 OS=Methanocaldococcus jannaschii GN=MJ0672 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 50/191 (26.18%), Postives = 92/191 (48.17%), Query Frame = 1
Query:   94 VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLS-KALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIQDMIKTG 663
            +L +F ++ +LW+      +I      FN +  D   ++    LLF+          L++ N  KK+ W  ++L G    +   +  SG    LS K +  L     + +  +V  I+ I+T F SN   T ++VP+L  ++  +    L+L V   + A  +F+LP GTP N + ++ G ++ ++M+K G
Sbjct:  240 LLVIFVLIASLWIISDYLSEI------FNVQYFDSVIAIFAIILLFVF--------NLVEVNDFKKIDWGTLILFGGALCLGGVIVKSGANTFLSEKLIAILGNLTPIVLLFLVVTITIILTNFISNTGLTGIIVPILFGVSLGIPKEILILAV--GMSASCSFILPVGTPPNAIVYSEG-VKKEEMMKIG 413          
The following BLAST results are available for this feature:
BLAST of CX292145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
INDY2_DROME1.139e-2126.91Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]
Y608_HAEIN6.690e-1431.71Uncharacterized transporter HI0608 OS=Haemophilus ... [more]
Y672_METJA6.262e-1226.18Uncharacterized transporter MJ0672 OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionC04011A10SK FlavFr1 Citrus clementina cDNA clone C04011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292145 ID=CX292145; Name=CX292145; organism=Citrus clementina; type=EST; length=729bp
CTCGTGCGATTCGGCACGAGGGAGTATTTGGACAAAGCAAATCTCAAGAG
AGAGCTTGACATGTTAGGTCCAATGGCTTTTGCTGAAAAGATGGTACTAG
CTGTATTTGGGATGCTAATAGCATTGTGGATGACAAGATCAATAACAGAT
GACATTCCAGGTTGGGGAGCACTCTTCAATGACCGTGCTGGTGATGGAAC
TGCTAGTGTTGTGATGGCAACATTGTTGTTCATAATTCCGAGCATGAAGC
AAAAGGGAGAAAAATTGATGGATTGGAACAAATGCAAGAAGCTACCTTGG
AACATTATATTGCTTTTAGGGGCTGGCTTTGCTATAGCTGATGGAGTCAG
GACTAGTGGTCTTGCTGATGATCTATCAAAAGCATTGGATTTCCTGGAGG
CAGCGCCCTATTTAGCCATTGCACCCATCGTATGTCTGATTAGCGCGATT
ATTACTGAATTCACATCAAATAATGCCACAACAACCCTCGTTGTTCCACT
TCTGATCCAAATAGCAAAAACTATGCATGTTCATCCATTGCTTCTTATGG
TTCCTGGAGCAATTGGAGCACAATTTGCTTTCTTGTTGCCGACTGGAACC
CCTTCAAATATTGTTGGATTCACAACCGGGCACATCGAAATTCAAGATAT
GATCAAGACAGGGCTGCCCCTTAGATTGCTGGCATTGCTGCTCTGGCCTT
TCTATGCCTACACTGGTGCTTATGTTTTT
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