CX292184

Overview
NameCX292184
Unique NameCX292184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 APGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            APGCG W+RP+  NP YKGKW  P IDNP+Y+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FDN +I  D ++ + +    W
Sbjct:  363 APGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGW 455          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 2
Query:    8 GCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 286
            GCGEWK PM  NP YKG W  P +DNPNY+GIW P++IPNP+YFE D P      +A+G+E+W+M   I FDN +I  +++VA+ + A  W+ K
Sbjct:  354 GCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLTSFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGWRWK 447          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 2
Query:    8 GCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDV 295
            GCGEWK PM  NP YKG W  P I+NPNY+G+W PQ+IPNP+YFE D P      +A+G+E+W+M   I FDN +I  +++VA+ +    W+ K  V
Sbjct:  354 GCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFEDDHPFLLTSFSALGLELWSMTPDIYFDNFIICSEKEVADQWATDGWELKIMV 450          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    8 GCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 286
            GCGEW  PM  NP YKG W  P IDNPNY+GIW P++IPNP+YFE + P       A+G+E+W+M   I FDN +I  +++VA+ + A  W  K
Sbjct:  350 GCGEWSPPMIDNPKYKGIWRPPMIDNPNYQGIWSPRKIPNPDYFEDNHPFLLTSFRALGLELWSMTSDIYFDNFIICSEKEVADRWAADGWGMK 443          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    8 GCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGILFDNILISKDEK 247
            GCG WK P  +NP YKGKW  P I NP +KG W  + I NPNYFE  KP     PI AVGIE+WTM + ILFDNILI+  E+
Sbjct:  357 GCGTWKAPTIKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFE-PKPFAGLAPITAVGIEMWTMSENILFDNILITSSEE 437          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 46/94 (48.94%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    8 GCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 286
            GCGEWK PM RNP Y+G W  P I NP + G W P++IPNP+YF+ D P  F P+  VG E+WTMQ  I F NI +    + AE      + PK
Sbjct:  331 GCGEWKPPMIRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHSIEDAERLGNETFLPK 424          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-18
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 262
            G+W+ PM  NP YKG+W A  I NP YKG+WKP+ IPNP Y   DK   F+ IAAVG ++W ++ G +FDNI+++     A+++
Sbjct:  256 GKWEAPMISNPKYKGEWKAKKIPNPAYKGVWKPRDIPNPEYEADDKVHIFDEIAAVGFDLWQVKSGTIFDNIIVTDSLAEAKAF 339          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNY-FELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 292
            GEW+RP K NP YKG+W    IDNP YKG WKP QI NP Y  + +      I  VG ++W +  G +FDNILI+     A+      W+ ++D
Sbjct:  257 GEWERPQKDNPEYKGEWTPRRIDNPKYKGEWKPVQIDNPEYKHDPELYVLNDIGYVGFDLWQVDSGSIFDNILITDSPDFAKEEGERLWRKRYD 350          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP YKGIW   +I NP Y     PD     +E  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPEYKGIWIHPEIDNPEY----SPDSNIYAYENFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
The following BLAST results are available for this feature:
BLAST of CX292184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALX_HUMAN6.951e-2549.46Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CLGN_HUMAN9.078e-2551.06Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CLGN_MOUSE3.450e-2449.48Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_BOVIN2.920e-2350.00Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_CAEEL7.953e-2158.54Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALX_SCHPO1.357e-2048.94Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALR_EUGGR1.658e-1847.62Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_SCHMA1.075e-1743.62Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_BOVIN2.395e-1743.01Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_RAT1.188e-1640.86Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011E05SK FlavFr1 Citrus clementina cDNA clone C04011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292184 ID=CX292184; Name=CX292184; organism=Citrus clementina; type=EST; length=660bp
AGCCCCTGGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCT
ACAAGGGCAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGT
ATTTGGAAGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAA
ACCTGACTTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGC
AGGATGGTATTTTGTTTGACAACATTTTGATATCAAAGGATGAGAAAGTT
GCAGAGTCCTATCGGGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAA
AGAGAAACTGAAGGCTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAG
GCTTCCAGAAGAAGGTATTTGATCTCTTGTACAAGGTTGCAGACATTCCT
TTCTTGGATGCATACAAACTTAAGATCATTGATGTGATTGAGAAGGGAGA
GAAACAACCAAACCTTACAATTGGTATCCTTGTCTCCGTTGTGGCGGTGA
TCATCACAGTTCTGTTCAAGATCATTTTTGGTGGAAAGAAGGCTAAAGTA
GAGCCCCCAAAAGAAACAGAAGCTGCAGAGAGTTCCTCGAGCAAACAAGA
GGACAGTGGTGAAAAGGAAGAAGAGACCGAGAAGGAAGAAACTGCTGCTG
CTCCTGCTCG
back to top