CX292184

Overview
NameCX292184
Unique NameCX292184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            G W+ PM  NP YKG+W A  I NP YKGIW    I NP+Y   DK  +F+ +  VG E+W ++ G +FDNIL++ D + A+ +    W
Sbjct:  263 GTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTW 351          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  259 GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 292
            GEW  P   NP YKG W    I NPNYKG WK   I NP++   D PD   F  +  VG+E+W ++ G LFDNI+I  D + A++     W  + D
Sbjct:  268 GEWTAPTIPNPEYKGPWKPKKIKNPNYKGKWKAPLIDNPDF--KDDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGKQKD 361          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP---DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            GEW  P   NP YKG W    I NPNY+G WK   I NP++   D P    F+ +  +GIE+W ++ G LFDN LI+ D ++A+++    W
Sbjct:  270 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF--KDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETW 358          
The following BLAST results are available for this feature:
BLAST of CX292184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_RABIT1.188e-1640.86Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_MOUSE1.188e-1640.86Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_CRIGR1.188e-1640.86Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_CHLRE1.188e-1643.82Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_MACFU4.516e-1639.78Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA4.516e-1639.78Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN4.516e-1639.78Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CERAE4.516e-1639.78Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_NICPL1.314e-1542.71Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_ORYSJ1.716e-1541.76Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]

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Properties
Property NameValue
Genbank descriptionC04011E05SK FlavFr1 Citrus clementina cDNA clone C04011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292184 ID=CX292184; Name=CX292184; organism=Citrus clementina; type=EST; length=660bp
AGCCCCTGGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCT
ACAAGGGCAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGT
ATTTGGAAGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAA
ACCTGACTTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGC
AGGATGGTATTTTGTTTGACAACATTTTGATATCAAAGGATGAGAAAGTT
GCAGAGTCCTATCGGGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAA
AGAGAAACTGAAGGCTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAG
GCTTCCAGAAGAAGGTATTTGATCTCTTGTACAAGGTTGCAGACATTCCT
TTCTTGGATGCATACAAACTTAAGATCATTGATGTGATTGAGAAGGGAGA
GAAACAACCAAACCTTACAATTGGTATCCTTGTCTCCGTTGTGGCGGTGA
TCATCACAGTTCTGTTCAAGATCATTTTTGGTGGAAAGAAGGCTAAAGTA
GAGCCCCCAAAAGAAACAGAAGCTGCAGAGAGTTCCTCGAGCAAACAAGA
GGACAGTGGTGAAAAGGAAGAAGAGACCGAGAAGGAAGAAACTGCTGCTG
CTCCTGCTCG
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