CX292184

Overview
NameCX292184
Unique NameCX292184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDF-----EPIAAVGIEIWTMQDGILFDNILISKDEKVAE 256
            GEW+ PM  NP YKG W    IDNP YKG W   +I NP Y     PD      + I AVG+++W ++ G +FD+ LI+ D   A+
Sbjct:  259 GEWEPPMIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY----TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK 340          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAES 259
            G W+ P   N AYKG W A  I NPNYKG WK   I NP +   D PD    + I   GIE+W ++ G +FDNILI  D   A S
Sbjct:  269 GLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEF--EDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARS 351          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 262
            GEW+ P   NP YKG+W A  I NP YKG W    I NP Y E ++   F  + A+G E+W ++ G +F+N++++   + A+ +
Sbjct:  260 GEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDF 343          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 277
            G+W+  M + P Y+       ID    K +W  Q++ N    E D  +FE I AVG+E+W ++ G +FDN LI+ DE+ AE++  + W
Sbjct:  250 GDWQAAMLQKPPYQDGLKPEGID----KDVWLHQKMKNSYLTEYDLSEFENIGAVGLELWQVRSGTIFDNFLITDDEEYAENFGKATW 333          
BLAST of CX292184 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 29/84 (34.52%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   14 GEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 262
            GEW+ PM  NP YKG+W      NP YKG W   +I  P+Y   D    ++ I A+G ++W ++ G +FD+++++   + A+ +
Sbjct:  257 GEWEPPMVDNPEYKGEWKPKQKKNPAYKGKWIHPEIEIPDYTPDDNLYVYDDIGAIGFDLWQVKSGTIFDDVIVTDSVEEAKKF 340          
The following BLAST results are available for this feature:
BLAST of CX292184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_BOMMO4.673e-1343.02Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR3_ARATH4.673e-1347.06Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]
CALR_DICDI1.776e-1238.10Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR3_BOVIN5.713e-1136.36Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]
CALR_ONCVO7.461e-1134.52Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011E05SK FlavFr1 Citrus clementina cDNA clone C04011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292184 ID=CX292184; Name=CX292184; organism=Citrus clementina; type=EST; length=660bp
AGCCCCTGGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCT
ACAAGGGCAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGT
ATTTGGAAGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAA
ACCTGACTTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGC
AGGATGGTATTTTGTTTGACAACATTTTGATATCAAAGGATGAGAAAGTT
GCAGAGTCCTATCGGGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAA
AGAGAAACTGAAGGCTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAG
GCTTCCAGAAGAAGGTATTTGATCTCTTGTACAAGGTTGCAGACATTCCT
TTCTTGGATGCATACAAACTTAAGATCATTGATGTGATTGAGAAGGGAGA
GAAACAACCAAACCTTACAATTGGTATCCTTGTCTCCGTTGTGGCGGTGA
TCATCACAGTTCTGTTCAAGATCATTTTTGGTGGAAAGAAGGCTAAAGTA
GAGCCCCCAAAAGAAACAGAAGCTGCAGAGAGTTCCTCGAGCAAACAAGA
GGACAGTGGTGAAAAGGAAGAAGAGACCGAGAAGGAAGAAACTGCTGCTG
CTCCTGCTCG
back to top