CX292197

Overview
NameCX292197
Unique NameCX292197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  299 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEA------LDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVL 685
            R++++++DR+ P+   RW+      +++ +R+  V+G+YIV Y              +PK DP  E       ++   LPT   DEFRPFIRRLPEFKFWY+  +A   A + +FF IFDVPVFWPIL+ Y++VL
Sbjct:   20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVL 154          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  248 DAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            + AS+ A IAK  S    ++Q+YLD+ TPH  QRW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY   +A  ++ +++ FSIFD+PVFWPILL Y+++LF LT
Sbjct:   10 NGASSNALIAKMNSA-KLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLT 160          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  269 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            P+    +    ++Q+YLD+ TPH  +RW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY   +A  ++ L++ FSIFD+PVFWPILL Y+I+LF LT
Sbjct:   16 PLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLT 160          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  296 SRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG-FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPT---KGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +R +Q  ++++     QRW      + +Y+LRV    G +Y++TY              SPK DPE E   G SLPT   +  DE +PFIRRLPEF FW++I KA  ++   TF    D+PVFWPILL Y+I++F +T
Sbjct:   23 ARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVT 160          
The following BLAST results are available for this feature:
BLAST of CX292197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_SCHPO6.545e-2741.48Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_SACPS1.458e-2640.13Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_YEAST7.236e-2638.62Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_DICDI1.277e-2240.58Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionC04011F06SK FlavFr1 Citrus clementina cDNA clone C04011F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292197 ID=CX292197; Name=CX292197; organism=Citrus clementina; type=EST; length=708bp
GGCACGAGGCCCTTTGAGAAATTATAATTCGCGTAAAATAAATGCCGGAA
AAAGAATTCATCTAAACGAGTGGGGCCATTACCCGCACGCTGCACCTTAA
TTCTTTAATCGAACAAAATTGTAGTAAGAAGATTCACATTCTGCAGAAGC
AGATCCGTCATCTCATATCCCGTCGGTGCCGTAACCCTAAATTGGCGTTT
CGTTAAGGAATTTGTAAGCTTAAAAAACCATGGAAGGACCAGGGGCTGAT
GCTGCTTCTGCGGTGGCCCCCATTGCAAAGTGGAGAAGTGATTTCTCGAG
GATGTTTCAGTACTATCTGGATCGATCAACCCCGCATCCATTGCAGAGGT
GGATTGGAACTCTTGCCGCTGCGTCGATTTACTTGTTGCGTGTTTACTGT
GTTCAAGGGTTTTACATTGTCACATATGGCTTAGGAATCTATATTCTGAA
TTTGTTGATTGGATTCCTATCGCCGAAGATTGATCCGGAGTTTGAAGCCT
TGGATGGAGCTTCATTGCCAACTAAAGGGTCTGATGAGTTTAGGCCATTC
ATTCGCCGTCTTCCTGAGTTTAAGTTCTGGTATGCCATCACAAAGGCTTT
CTGTGTGGCTTTCCTTATGACCTTCTTTTCTATATTTGATGTTCCTGTCT
TTTGGCCCATATTGCTGTGCTATTGGATTGTTCTGTTTGTCCTTACATGA
AGCGCCAA
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