CX292198

Overview
NameCX292198
Unique NameCX292198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = 2
Query:  170 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAV 484
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK + ++VGAKKD+L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 58/110 (52.73%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  164 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 493
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G    ++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 58/110 (52.73%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  164 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 493
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G    ++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 502
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L ++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 502
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L ++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 502
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L ++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  164 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEK 490
            +E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K+DVDEL  VA+E+ V AMPTFVL K GK ++RI+GAKKDEL+  V K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 496
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKVDVD + +VAE   + AMPTF + K+G     +VGA +D+L+  V KHA
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 111          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAV 484
            G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL VDVDEL   +  W ++A PTF   K G+ + ++VGA K ELQ  V
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  173 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDEL 472
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF   ++G+ + ++VGA K EL
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
The following BLAST results are available for this feature:
BLAST of CX292198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TRXH_PICMA2.332e-3255.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ1.671e-3052.73Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.671e-3052.73Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL1.847e-2954.55Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.847e-2954.55Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA2.413e-2954.55Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH3.731e-2246.79Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE1.016e-1946.79Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH9_ARATH1.123e-1841.35Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC8.051e-1737.00Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC04011F07SK FlavFr1 Citrus clementina cDNA clone C04011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292198 ID=CX292198; Name=CX292198; organism=Citrus clementina; type=EST; length=713bp
CAAGAAATAGATATTTCCGATACATATATCAAATTGAACATTCGGCGTGC
TGCTCGCTATTTATAGAGATCCAAGATTGCAAGAGTTCCGTCACCAAACA
CAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAACTTGTGAT
CATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCACACTGTTG
AATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAAACTGATA
GTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGATGTCTCC
AATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTCTTGAAGG
TGGATGTTGATGAATTGAAGTCTGTCGCTGAGGAATGGGCTGTGGAAGCC
ATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGCAGAGGATTGT
GGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCACGCAACTG
TTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTACATGAATCTCA
CTGGTCTTTTATTGTAAGATGTGTGTTTGTGGTTGCTTAATGTAAGAATA
TGGTACCATGTTTAACAGGCCTGTATATATGAATAAATGANCATCTTCTA
CCACACCGTCTTTGGCTTCTGAAAGTTTATTTCGTAGGCATGTTTGTAGT
AGCAAATGAAATT
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