CX292198

Overview
NameCX292198
Unique NameCX292198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  251 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEKH 493
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ + ++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CX292198 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  248 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAK-KDELQLAVEK 490
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+ + VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 163          
The following BLAST results are available for this feature:
BLAST of CX292198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_STAAR8.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN8.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM8.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC8.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB8.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA88.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA38.621e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIOM_BOVIN8.621e-1140.96Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011F07SK FlavFr1 Citrus clementina cDNA clone C04011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292198 ID=CX292198; Name=CX292198; organism=Citrus clementina; type=EST; length=713bp
CAAGAAATAGATATTTCCGATACATATATCAAATTGAACATTCGGCGTGC
TGCTCGCTATTTATAGAGATCCAAGATTGCAAGAGTTCCGTCACCAAACA
CAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAACTTGTGAT
CATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCACACTGTTG
AATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAAACTGATA
GTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGATGTCTCC
AATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTCTTGAAGG
TGGATGTTGATGAATTGAAGTCTGTCGCTGAGGAATGGGCTGTGGAAGCC
ATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGCAGAGGATTGT
GGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCACGCAACTG
TTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTACATGAATCTCA
CTGGTCTTTTATTGTAAGATGTGTGTTTGTGGTTGCTTAATGTAAGAATA
TGGTACCATGTTTAACAGGCCTGTATATATGAATAAATGANCATCTTCTA
CCACACCGTCTTTGGCTTCTGAAAGTTTATTTCGTAGGCATGTTTGTAGT
AGCAAATGAAATT
back to top