CX292208

Overview
NameCX292208
Unique NameCX292208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.663e-73
Identity = 143/215 (66.51%), Postives = 167/215 (77.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT------PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +KK+V+ L  ADL GKRV VRVD NVPLDD   ITDD R+RAA+PTI+ L   GAKVILSSH GRPKG T       K+ L P+  RLSELLG  V   NDCIGEEV+  VA +  G VLLLENVRFH  EE N PEFA++LAS+ADLYVNDAFG+AHRAHASTEGV ++L+PSVAG+L++KEL YL  A+ NP++P AAIVGGSKVS+KIGVIE
Sbjct:    2 SKKTVANLSAADLAGKRVLVRVDFNVPLDDQGKITDDTRIRAALPTIQDLTSKGAKVILSSHFGRPKGETFAERVKDKFRLTPVAARLSELLGKPVPKPNDCIGEEVKAQVAAMQNGDVLLLENVRFHPGEEANTPEFAQELASVADLYVNDAFGTAHRAHASTEGVTRYLRPSVAGYLIEKELQYLQSAIENPQRPLAAIVGGSKVSSKIGVIE 216          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.948e-72
Identity = 139/209 (66.51%), Postives = 163/209 (77.99%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +KKS++ L  AD+ GKR  VRVD NVP+DD   ITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+ EEEKND EFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L++KEL YL  A+ NP++P AAI+GGSKVS+KIGVIE
Sbjct:    2 SKKSLASLSSADISGKRALVRVDFNVPVDDQGKITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDDKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVAALQNGQVLLLENVRFYPEEEKNDAEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQNAIENPQRPLAAIIGGSKVSSKIGVIE 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CARHZ (Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pgk PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.156e-72
Identity = 135/209 (64.59%), Postives = 175/209 (83.73%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            KKS+   ++ ++KGK+VFVRVD NVPL++N  ITDD R+RAA+PT++YL   GAK+I++SHLGRPKG    KYSLKP+  RL+ELLG+EVKMA D +G EVEKM  E+  G VLLLENVRF+ EEEKNDPEFA+KLA LA+++V+DAFG+AHRAHAST G+A +L P+VAGFLM+KE+++L  A++NP++PF AI+GG+KVS KIGVIE
Sbjct:    3 KKSI---RDVEVKGKKVFVRVDFNVPLNENREITDDTRIRAALPTLQYLREQGAKLIVASHLGRPKGQFNEKYSLKPVAKRLAELLGIEVKMAPDVVGPEVEKMAGELRPGEVLLLENVRFYPEEEKNDPEFARKLARLAEIFVSDAFGAAHRAHASTAGIASYL-PAVAGFLMEKEINFLSRALNNPERPFVAIIGGAKVSDKIGVIE 207          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_THETN (Phosphoglycerate kinase OS=Thermoanaerobacter tengcongensis GN=pgk PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.700e-71
Identity = 137/202 (67.82%), Postives = 163/202 (80.69%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            +++ D+ GKRV VRVD NVP+D+N NITDD R+R A+PTI+YL+ H AKVIL SHLGRPKG   P YSLKP+  RLSELL   V MA D IGE+ +   A + EG VLLLENVRFH EEEKNDPEFAK+LASLAD+YVNDAFG+AHRAHAST GVAK+L P+VAGFL++KEL  +  A+ NPK+PF AI+GG+KVS KIGVI
Sbjct:    6 VRDIDVSGKRVLVRVDFNVPMDENKNITDDRRIREALPTIEYLINHNAKVILVSHLGRPKGKFNPDYSLKPVAKRLSELLKKPVIMAEDVIGEDAKVKAAALKEGEVLLLENVRFHAEEEKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAKYL-PAVAGFLIEKELSIMGEALENPKRPFVAILGGAKVSDKIGVI 206          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_DICTD (Phosphoglycerate kinase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pgk PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 136/209 (65.07%), Postives = 167/209 (79.90%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AKK++  L++ DLKGKRV VRVD NVPL + + ITDD R+R A+PTIKYLM  GAKVIL SHLGRPKG      L P+  RLSELLG  VK  NDCIGEEVE+ ++ + EG V+LLEN+RF+KEEE NDPEFAKKLASLADLYVNDAFG+AHRAHAST GVA+++ P VAG LM+KE++ +  A+ +P++PF  I+GG+KVS KIGVI+
Sbjct:    2 AKKTILDLRDEDLKGKRVLVRVDFNVPLKNGV-ITDDRRIREALPTIKYLMDKGAKVILVSHLGRPKGFQDDLRLDPVAKRLSELLGKPVKKLNDCIGEEVEREISNMKEGDVILLENIRFYKEEEANDPEFAKKLASLADLYVNDAFGTAHRAHASTAGVAQYI-PGVAGLLMKKEIEIMGKALESPERPFICILGGAKVSDKIGVIK 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.829e-70
Identity = 139/210 (66.19%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S++ L  +DL GKRV VRVD NVPL+D   ITDD R+RAA+PTI  L+G GAKVIL++H GRPKG V  K  L P+  RLSELL   V     CIG + E  V  +  G V+LLENVRF  EEEKND +FAK+LA LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLAKLNTSDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILAAHFGRPKGQVNDKMRLTPVATRLSELLSKPVTKTESCIGPDAEAKVNAMANGDVVLLENVRFFAEEEKNDADFAKQLAGLADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CYAP7 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7424) GN=pgk PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.695e-70
Identity = 134/209 (64.11%), Postives = 164/209 (78.47%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            KK+++ L  AD++GKRV VRVD NVPLDD  NITDD R+RAA+PTI+ L+  GAKVIL SH GRPKG V     L P   RLSELLG +V M +DC+G  V + V ++  G V LLEN+RFH EEE NDPEF+K+LA+ ADLYVNDAFG+AHRAHASTEGV  +L PSVAG+L++KEL+YL  A+ NP++P AAI+GGSKVS+KIGVIE
Sbjct:    3 KKTIANLSRADVEGKRVLVRVDFNVPLDDAGNITDDTRIRAALPTIQDLISKGAKVILCSHFGRPKGKVVESMRLTPTAKRLSELLGQDVVMCDDCVGASVTEAVNKLENGQVALLENLRFHAEEEGNDPEFSKQLAANADLYVNDAFGTAHRAHASTEGVTHYLSPSVAGYLIEKELNYLQSAIENPQRPLAAIIGGSKVSSKIGVIE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S++ L   DL GKRV VRVD NVPL+D   ITDD R+RAA+PTI  L+G GAKV+L++H GRPKG V     L P+  RLSELLG  V   + CIG + E  V  +  G V+LLENVRF  EEEKND  FA+KLA+LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLVGKGAKVVLAAHFGRPKGQVNEAMRLTPVAARLSELLGKTVTKTDSCIGPDAEAKVGAMANGDVVLLENVRFVAEEEKNDSGFAEKLAALADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.075e-69
Identity = 139/212 (65.57%), Postives = 162/212 (76.42%), Query Frame = 1
Query:   76 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            M +K+S++ L EADL GKRVFVRVD NVPLD N +ITDD R+RAA+PTIK L+  GAKVIL SH GRPKG V     L P+  RL ELLG  V   +DCIG EV   +A +P GGV LLEN+RFH  EE ND EFAK LA+ ADLYVNDAFG+AHRAHASTEGV  FL P+VAG+L++KEL +L GA+  PK+P  AIVGGSKVS+KIGVIE
Sbjct:    1 MLSKQSIANLTEADLAGKRVFVRVDFNVPLD-NGSITDDTRIRAALPTIKDLLSKGAKVILGSHFGRPKGKVVDSMRLTPVGDRLGELLGQPVVKCDDCIGAEVTAKIASLPNGGVALLENLRFHAGEEGNDAEFAKALAANADLYVNDAFGTAHRAHASTEGVTHFLSPNVAGYLIEKELQFLQGAIEAPKRPLVAIVGGSKVSSKIGVIE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNR3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.404e-69
Identity = 137/210 (65.24%), Postives = 163/210 (77.62%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S+S L    L+GKRV VRVD NVPL+D   ITDD R+RAA+PTIK L G GAKVILS+H GRPKG V     L P+  RLSELLG  V   + CIG + E  VA + +G V+LLENVRF  EEEKN+  FA+KLA+LA++YVNDAFG+AHRAHASTEGV K+L PSVAG+LM+KEL YL GAV +PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLSALNSDALRGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTIKDLTGKGAKVILSAHFGRPKGQVNEDMRLTPVAARLSELLGAPVAKTDSCIGSDAEAKVAAMADGDVVLLENVRFFAEEEKNESGFAEKLAALAEVYVNDAFGAAHRAHASTEGVTKYLSPSVAGYLMEKELQYLQGAVDDPKRPLAAIVGGSKVSSKIGVLE 211          
The following BLAST results are available for this feature:
BLAST of CX292208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CYAP44.663e-7366.51Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_NOSP73.948e-7266.51Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_CARHZ5.156e-7264.59Phosphoglycerate kinase OS=Carboxydothermus hydrog... [more]
PGK_THETN5.700e-7167.82Phosphoglycerate kinase OS=Thermoanaerobacter teng... [more]
PGK_DICTD2.166e-7065.07Phosphoglycerate kinase OS=Dictyoglomus turgidum (... [more]
PGK_SYNS32.829e-7066.19Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_CYAP73.695e-7064.11Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNS98.231e-7065.71Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNY31.075e-6965.57Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_SYNR31.404e-6965.24Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011G05SK FlavFr1 Citrus clementina cDNA clone C04011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292208 ID=CX292208; Name=CX292208; organism=Citrus clementina; type=EST; length=709bp
AATCTTCGATCTCATTCCAAAATCTAACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAA
ACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTG
TTATTGAAT
back to top