CX292208

Overview
NameCX292208
Unique NameCX292208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.027e-68
Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L +  L+GK+V VRVD NVPL+++  ITDD R+RAA+PTI+YL+ H AKVIL++H GRPKG V  K  L P+  RLSELLG  V + N CIG+E       +  G VLLLENVRF  EEEKND EFA+KLAS AD+YVNDAFG+AHRAHAST+GV  +L PSVAGFL++KEL YL GAV +P +P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKTHLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLINHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQNVALTNSCIGDEAVAQSNSLSNGDVLLLENVRFFGEEEKNDLEFAEKLASHADMYVNDAFGAAHRAHASTQGVTNYLSPSVAGFLLEKELKYLQGAVDSPNRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.648e-68
Identity = 134/210 (63.81%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AKKSV+ L EADL GKRVFVRVD NVPL+++  ITDD R+RAA+PTIKYL   GAKVIL SH+GRPKG V     L P+  RLSELLG  V   +DC+G+ V + +A +  G V LLEN+RF+  EEKNDPEFAK+LA+ AD+YVNDAFG+AHRAH STEGV   +  SVAG L++KEL +L GA+  PK+P  AIVGGSKVS+KIGVIE
Sbjct:    2 AKKSVANLTEADLSGKRVFVRVDFNVPLNESGVITDDTRIRAALPTIKYLTEKGAKVILGSHMGRPKGQVVDSMRLTPVAARLSELLGQSVTKCDDCVGDAVNQAIANLGNGQVALLENLRFNPGEEKNDPEFAKQLAANADIYVNDAFGTAHRAHGSTEGVTHHVDTSVAGLLIEKELQFLKGAIEAPKRPLVAIVGGSKVSSKIGVIE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.648e-68
Identity = 134/210 (63.81%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S+S L  ADL+ KRV VRVD NVPL++N  ITDD R+RAA+PTI  L+  GA+VILS+H GRPKG +     L P+  RLSELLG  V     C+G + E  V  + +G V+LLENVRF  EEEKND  FA+KLA+LAD YVNDAFG+AHRAHASTEGV KFL PSVAG LM+KEL YL GA+ +PK+P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLSSLSAADLRSKRVLVRVDFNVPLNENGAITDDTRIRAALPTINDLIDKGARVILSAHFGRPKGQINEGMRLTPVAKRLSELLGKTVIKTESCVGSDAEAKVNAMADGDVVLLENVRFFSEEEKNDANFAQKLAALADAYVNDAFGAAHRAHASTEGVTKFLNPSVAGHLMEKELQYLQGAIDDPKRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROM5 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.458e-68
Identity = 130/210 (61.90%), Postives = 165/210 (78.57%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L ++ L+GK+V VRVD NVPL+D+  ITDD R+RAA+PTIKYL+ + AKVIL++H GRPKG V  +  L P+  RLSE+LG +V +   CIGEE  +    +  G VLLLENVRF++EEEKND  FAK LA+ AD+YVNDAFG+AHRAHAST+GV KFL+PSVAGFL++KEL YL GA+  P +P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKSKLEGKKVLVRVDFNVPLNDDGQITDDTRIRAAIPTIKYLINNSAKVILAAHFGRPKGKVNERMRLTPIAARLSEILGKKVNLTESCIGEEALEKSNNLNNGDVLLLENVRFYEEEEKNDLNFAKNLAAHADMYVNDAFGAAHRAHASTQGVTKFLEPSVAGFLLEKELKYLQGAIDAPNRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.458e-68
Identity = 134/210 (63.81%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +KK+++ L  ADL GKRV VR D NVPLD +  ITDD R+RAA+PTI+ L   GAKVIL+SH GRPKG V     L P+  RLSELLG  V   +DCIG+EV   V  +  G V LLENVRFH  EE NDPEFA++LAS+ADLYVNDAFG+AHRAHASTEGV   L PSVAG+L++KEL YL  A+  P++P AAIVGGSKVS+KIGVIE
Sbjct:    2 SKKTIANLTSADLSGKRVLVRADFNVPLDGDGKITDDTRIRAALPTIQDLTSKGAKVILASHFGRPKGQVNESMRLTPVAARLSELLGQAVTKCDDCIGDEVAAKVGALQNGQVALLENVRFHSGEEANDPEFARQLASVADLYVNDAFGTAHRAHASTEGVTHHLSPSVAGYLIEKELKYLQAAIEGPQRPLAAIVGGSKVSSKIGVIE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_THEEB (Phosphoglycerate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 132/209 (63.16%), Postives = 160/209 (76.56%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +KKSV+ L  ADL+GKRV VRVD NVP+D+   ITD+ R+RAA+PTI+ L+  GAKVIL SH GRPKGV  K  L P+  RLSELL   V   +DCIG+ V      +  G V LLENVRFH  EEKNDPEFAK+LA+ A++YVNDAFG+AHRAHAST GV ++L P VAGFLM+KEL+YL  A+ +P++P AAIVGGSKVS+KIGVIE
Sbjct:    2 SKKSVAQLSAADLEGKRVLVRVDFNVPVDEKGVITDETRIRAALPTIQDLISKGAKVILVSHFGRPKGVDEKLRLTPVAQRLSELLHKPVAKLDDCIGDAVIAHTQAMANGDVCLLENVRFHPGEEKNDPEFAKQLAACAEVYVNDAFGTAHRAHASTAGVTQYLSPCVAGFLMEKELEYLQNAIEHPRRPLAAIVGGSKVSSKIGVIE 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 135/210 (64.29%), Postives = 163/210 (77.62%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            AK+S+S L   DL GKRV VRVD NVPL++  +ITDD R+RAA+PTI++L+   A+VILS+H GRPKG V     L P+  RLSELLG  V     CIG + EK V E+  G V+LLENVRF  EEEKND EFAKKLASLA++YVNDAFG+AHRAHASTEGV  +L PSVAG+LM+KEL YL GA+ +P++P AAIVGGSKVS+KIGV+E
Sbjct:    2 AKRSLSNLSVEDLCGKRVLVRVDFNVPLNEEGSITDDTRIRAALPTIQHLIEKEARVILSAHFGRPKGKVNEDMRLTPVSQRLSELLGKTVVKTESCIGPDAEKKVHEMSNGDVVLLENVRFIGEEEKNDSEFAKKLASLAEVYVNDAFGAAHRAHASTEGVTNYLSPSVAGYLMEKELKYLQGAIDSPQRPLAAIVGGSKVSSKIGVLE 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67
Identity = 130/210 (61.90%), Postives = 165/210 (78.57%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L ++ L+GK+V VRVD NVPL+D+  ITDD R+RAA+PTIKYL+ + AKVIL++H GRPKG V  K  L P+  RLS++L  +V +   CIGEE       +  G VLLLENVRF++EEEKND +FAK LAS AD+YVNDAFG+AHRAHAST+GV KFL+P+VAGFL++KEL YL GA+  PK+P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKSKLEGKKVLVRVDFNVPLNDSGQITDDTRIRAAIPTIKYLINNSAKVILAAHFGRPKGKVNEKMRLTPVAARLSDILEQKVNLTESCIGEEALAKSNSLNNGEVLLLENVRFYEEEEKNDLDFAKNLASHADMYVNDAFGAAHRAHASTQGVTKFLEPAVAGFLLEKELKYLQGAIDAPKRPLAAIVGGSKVSSKIGVLD 211          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CYAP8 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 8801) GN=pgk PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67
Identity = 133/209 (63.64%), Postives = 159/209 (76.08%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            KKS+  L  AD+ GKRV VRVD NVPLD    ITDD R+RAA+PTIK L+  GAKVIL SH GRPKG V     L P+  RLSELLG  V M +DCIG+ V   + ++  G V LLEN+RFH EEE NDPEFA+KLA+ ADLYVNDAFG+AHRAHASTEGV  +L P+VAG+L++KEL+YL  A+ NP++P  AI+GGSKVS+KIGVIE
Sbjct:    3 KKSIVNLSPADVAGKRVLVRVDFNVPLD-GATITDDTRIRAALPTIKDLIEKGAKVILCSHFGRPKGQVVESMRLTPVATRLSELLGQPVVMCDDCIGDSVTAAINQLQNGQVALLENLRFHAEEEANDPEFAQKLAANADLYVNDAFGTAHRAHASTEGVTHYLSPNVAGYLIEKELNYLQAAIENPQRPLVAIIGGSKVSSKIGVIE 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +K S+S L +  L+GK+V VRVD NVPL+++  ITDD R+RAA+PTI+YL+ H AKVIL++H GRPKG V  K  L P+  RLSELLG  V + N CIG+E       +    VLLLENVRF  EEEKND EFA+KLAS AD+YVNDAFG+AHRAHAST+GV  +L PSVAGFL++KEL YL GAV +P +P AAIVGGSKVS+KIGV++
Sbjct:    2 SKLSLSSLDKTHLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLVNHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQSVALTNSCIGDEAVAKSNSLSNRDVLLLENVRFFGEEEKNDLEFAQKLASHADMYVNDAFGAAHRAHASTQGVTNYLSPSVAGFLLEKELKYLQGAVDSPNRPLAAIVGGSKVSSKIGVLD 211          
The following BLAST results are available for this feature:
BLAST of CX292208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROMS2.027e-6862.86Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNP22.648e-6863.81Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROM32.648e-6863.81Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM53.458e-6861.90Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM13.458e-6863.81Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_THEEB7.704e-6863.16Phosphoglycerate kinase OS=Thermosynechococcus elo... [more]
PGK_PROMA7.704e-6864.29Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMP1.314e-6761.90Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_CYAP81.314e-6763.64Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_PROM02.242e-6762.38Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011G05SK FlavFr1 Citrus clementina cDNA clone C04011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292208 ID=CX292208; Name=CX292208; organism=Citrus clementina; type=EST; length=709bp
AATCTTCGATCTCATTCCAAAATCTAACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAA
ACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTG
TTATTGAAT
back to top