CX292208

Overview
NameCX292208
Unique NameCX292208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_ECOHS (Phosphoglycerate kinase OS=Escherichia coli O9:H4 (strain HS) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 96/208 (46.15%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L  A+  P +P  AIVGGSKVSTK+ V++
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLD 202          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_ECO24 (Phosphoglycerate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 96/208 (46.15%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L  A+  P +P  AIVGGSKVSTK+ V++
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLD 202          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_COLP3 (Phosphoglycerate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 100/209 (47.85%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   94 VSVLKEADLK--GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP--KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            +S++K ADL    +RV +R DLNVP+ D   IT D R+RAA+PT+K  +  GAKV++ SHLGRP    P  K+SLKP+   LS  L   V++  D +         ++  G +++ EN+RF+  E+KND   AKKLA+L D++V DAFG+AHRA AST GVAKF   + AG L+  EL+ L  A+ NP +P  AIVGGSKVSTK+ V++
Sbjct:    1 MSIIKMADLTLANQRVLIREDLNVPVTDG-KITSDARLRAALPTLKLALEAGAKVMVMSHLGRPTEGQPEEKFSLKPVTDYLSAALNYPVRLVTDYLDG------VDVAAGELVVFENIRFNLGEKKNDDTLAKKLAALCDVFVMDAFGTAHRAQASTHGVAKFAATACAGPLLSGELEALGKALDNPARPLVAIVGGSKVSTKLTVLD 202          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CLAM3 (Phosphoglycerate kinase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 98/203 (48.28%), Postives = 132/203 (65.02%), Query Frame = 1
Query:  115 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP--KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            DL+G+RV VR DLNVPL D + I DD R+RA++ T+  L   GA+V++ SHLGRP G TP  KYSL+P+  RL ELLG +V  A+D +G+     V  + +G V++LEN+RFH EE   D      FA+ LA L D++V+D FG  HR  AS   +A  L PS AG L+  EL+ L     NP++P+  ++GGSKVS K+GVI
Sbjct:   11 DLRGRRVIVRCDLNVPLKDGV-IGDDGRIRASLGTLTGLREAGARVVVISHLGRPDG-TPDDKYSLRPVAARLGELLGADVAFASDTVGDSARAAVEALGDGDVVVLENLRFHAEETSKDETVRRGFAESLAELGDVFVSDGFGVVHRKQASVFELASAL-PSAAGSLIASELEVLDRLTENPERPYTVVLGGSKVSDKLGVI 210          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_ACIAD (Phosphoglycerate kinase OS=Acinetobacter sp. (strain ADP1) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 102/203 (50.25%), Postives = 133/203 (65.52%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            + + DL  KRV +R DLNVP+  N  IT D R+RAA+PTI+  +  GA V++ SHLGRP    PK   SL P+   LS+ LG EVK+  D +         EI  G V+LLENVRF+  E+KN+ E A+K A+L D++V DAFG+AHRA ASTEG A++ K + AG L+  ELD L  A+  P+KP  AIV GSKVSTK+ V+
Sbjct:    6 MTDLDLSEKRVLIREDLNVPVK-NGQITSDARLRAALPTIQAALAQGAAVMVCSHLGRPVEGEPKPEQSLAPVAAYLSDALGQEVKLLTDYLEG------VEIAPGQVVLLENVRFNLGEKKNNAELAQKYAALCDVFVMDAFGTAHRAEASTEGAARYAKVAAAGPLLATELDALGRALQTPEKPMVAIVAGSKVSTKLDVL 201          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PSEPF (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 99/207 (47.83%), Postives = 136/207 (65.70%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            +V  + + DL+GKRV +R DLNVP+ D + +T D R+ A++PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +G        ++  G ++L ENVRF+K E+KN  E A++ A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L  A+  P KP AAIV GSKVSTK+ V+
Sbjct:    2 TVLKMSDLDLQGKRVLIREDLNVPVKDGV-VTSDARILASLPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVADYLSKALGREVPLVADYLGG------VDVKAGDIVLFENVRFNKGEKKNADELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDALGKALGAPAKPMAAIVAGSKVSTKLDVL 201          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PSEE4 (Phosphoglycerate kinase OS=Pseudomonas entomophila (strain L48) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 103/208 (49.52%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   94 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ AA+PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L  A+  P KP AAIV GSKVSTK+ V+
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILAALPTIKLALEKGAAVMVCSHLGRPTEGEFSEENSLKPVAAYLSKALGREVPLVADYLDG------VEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVATAGPLLAAELDALGKALKAPAKPMAAIVAGSKVSTKLDVL 201          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PSEAE (Phosphoglycerate kinase OS=Pseudomonas aeruginosa GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 101/208 (48.56%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   94 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            ++VLK  + DLKGKRV +R DLNVP+ D   +  D R++AA+PT+K  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVA+F K + AG L+  ELD L  A+ NP +P AAIV GSKVSTK+ V+
Sbjct:    1 MTVLKMTDLDLKGKRVLIREDLNVPVKDG-QVQSDARIKAALPTLKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGREVPLLADYLDG------VEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVARFAKVAAAGPLLAAELDALGKALGNPARPMAAIVAGSKVSTKLDVL 201          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PSEAB (Phosphoglycerate kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 101/208 (48.56%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   94 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            ++VLK  + DLKGKRV +R DLNVP+ D   +  D R++AA+PT+K  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVA+F K + AG L+  ELD L  A+ NP +P AAIV GSKVSTK+ V+
Sbjct:    1 MTVLKMTDLDLKGKRVLIREDLNVPVKDG-QVQSDARIKAALPTLKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGREVPLLADYLDG------VEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVARFAKVAAAGPLLAAELDALGKALGNPARPMAAIVAGSKVSTKLDVL 201          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PSEA8 (Phosphoglycerate kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 101/208 (48.56%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   94 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            ++VLK  + DLKGKRV +R DLNVP+ D   +  D R++AA+PT+K  +  GA V++ SHLGRP     + + SLKP+   LS+ LG EV +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVA+F K + AG L+  ELD L  A+ NP +P AAIV GSKVSTK+ V+
Sbjct:    1 MTVLKMTDLDLKGKRVLIREDLNVPVKDG-QVQSDARIKAALPTLKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGREVPLLADYLDG------VEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVARFAKVAAAGPLLAAELDALGKALDNPARPMAAIVAGSKVSTKLDVL 201          
The following BLAST results are available for this feature:
BLAST of CX292208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ECOHS5.029e-4346.15Phosphoglycerate kinase OS=Escherichia coli O9:H4 ... [more]
PGK_ECO245.029e-4346.15Phosphoglycerate kinase OS=Escherichia coli O139:H... [more]
PGK_COLP35.029e-4347.85Phosphoglycerate kinase OS=Colwellia psychrerythra... [more]
PGK_CLAM35.029e-4348.28Phosphoglycerate kinase OS=Clavibacter michiganens... [more]
PGK_ACIAD5.029e-4350.25Phosphoglycerate kinase OS=Acinetobacter sp. (stra... [more]
PGK_PSEPF6.568e-4347.83Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PSEE46.568e-4349.52Phosphoglycerate kinase OS=Pseudomonas entomophila... [more]
PGK_PSEAE6.568e-4348.56Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]
PGK_PSEAB6.568e-4348.56Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]
PGK_PSEA86.568e-4348.56Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionC04011G05SK FlavFr1 Citrus clementina cDNA clone C04011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292208 ID=CX292208; Name=CX292208; organism=Citrus clementina; type=EST; length=709bp
AATCTTCGATCTCATTCCAAAATCTAACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAA
ACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTG
TTATTGAAT
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