CX292208

Overview
NameCX292208
Unique NameCX292208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BORHD (Phosphoglycerate kinase OS=Borrelia hermsii (strain DAH) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.095e-61
Identity = 119/207 (57.49%), Postives = 156/207 (75.36%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            S+  +K+ D  GKR  VR D NVPL +  NITDD R+RAA+PTI+YL   GA+V+L SHLGRPKG    KYSL P+  RLSELLG +VKM  DCIG+EV   V+ +  G V+LLEN+RF+++EE+N  +FAKKL+   D++VNDAFG+AHRAHAST G+A +L P+V GFLM+KE ++L   + NP+ PF +I+GGSKVS+KI V+E
Sbjct:    2 SIKTIKDFDFSGKRALVRCDFNVPLREG-NITDDTRIRAALPTIEYLKSQGARVVLMSHLGRPKGERNLKYSLMPVAKRLSELLGQDVKMLPDCIGDEVATAVSNMKNGDVVLLENIRFYRQEEENCNDFAKKLSQNGDIFVNDAFGTAHRAHASTAGLAAYL-PAVGGFLMEKEDEFLGKILKNPESPFVSIIGGSKVSSKIAVLE 206          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 114/203 (56.16%), Postives = 156/203 (76.85%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            L +  ++GKRV +RVD NVP+D+  NITDD R+  A+P+IK ++  G ++IL SHLGRPKG V  ++SL P+  RLSELL   V MA DCIG EV +    + +G V+LLEN+RFH EEE N+P+FAK+LASL +++VNDAFG+AHRAHASTEG+  ++  +VAG+L++KEL+YL  A+ NP++PF AI+GGSK+S KI V+E
Sbjct:    6 LSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSHLGRPKGKVNAEFSLAPVAHRLSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRFHAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGITHYVPVAVAGYLIEKELNYLGKALDNPERPFVAILGGSKISGKIDVLE 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 115/203 (56.65%), Postives = 156/203 (76.85%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            L +  ++GKRV +RVD NVPLD+  NITDD R+  A+P+IK ++ +G ++IL SHLGRPKG   + +SL P   RLSELL   V MA DCIG EV + V  + +G V++LEN+RFH EEE NDP+FAK+LASL ++YVNDAFG+AHRAHASTEG+ ++++ +VAG+L++KEL YL  A+  P++PF AI+GGSK+S KI V+E
Sbjct:    6 LSDITIQGKRVLMRVDFNVPLDEEKNITDDKRIVEALPSIKKIIENGGRLILMSHLGRPKGKPNQDFSLTPAAERLSELLDCPVIMAGDCIGTEVMQQVLALQDGEVIMLENLRFHPEEEANDPDFAKELASLGEIYVNDAFGTAHRAHASTEGITRYVQTAVAGYLIEKELMYLGKALQEPERPFVAILGGSKISGKIDVLE 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 123/208 (59.13%), Postives = 160/208 (76.92%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM+KEL+ L  A+SNP++PF AI+GG+KV  KIGVI
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALSNPERPFTAIIGGAKVKDKIGVI 205          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BACC3 (Phosphoglycerate kinase OS=Bacillus cereus (strain 03BB102) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 123/208 (59.13%), Postives = 160/208 (76.92%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM+KEL+ L  A+SNP++PF AI+GG+KV  KIGVI
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALSNPERPFTAIIGGAKVKDKIGVI 205          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BACC0 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH820) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 123/208 (59.13%), Postives = 160/208 (76.92%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM+KEL+ L  A+SNP++PF AI+GG+KV  KIGVI
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALSNPERPFTAIIGGAKVKDKIGVI 205          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BACAH (Phosphoglycerate kinase OS=Bacillus thuringiensis (strain Al Hakam) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 123/208 (59.13%), Postives = 160/208 (76.92%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 705
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM+KEL+ L  A+SNP++PF AI+GG+KV  KIGVI
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALSNPERPFTAIIGGAKVKDKIGVI 205          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.984e-61
Identity = 116/203 (57.14%), Postives = 155/203 (76.35%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            L +   +GKRV +RVD NVPLD+N NITDD R+  ++P+I+ ++  G ++IL SHLGRPKG V  ++SL P+  RLSELL   V MA DCIG EV + V  + +G VLLLEN+RFH EEE ND +FAK+LASL ++YVNDAFG+AHRAHASTEG+  +++ +VAGFL+++EL YL  A+  P++PF AI+GGSK+S KI V+E
Sbjct:    6 LSDIATQGKRVLMRVDFNVPLDENKNITDDKRIVESLPSIRKVIEEGGRLILMSHLGRPKGKVNAEFSLAPVAARLSELLDCPVGMAKDCIGTEVMQQVLALQDGEVLLLENLRFHAEEEANDADFAKELASLGEIYVNDAFGTAHRAHASTEGITHYVQTAVAGFLIERELRYLGKALQEPERPFVAILGGSKISGKIDVLE 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_PROVI (Phosphoglycerate kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=pgk PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 113/203 (55.67%), Postives = 154/203 (75.86%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            L +  ++GKR+ +RVD NVPL+D   ITDD R+  A+P+I+ ++ +G ++IL SHLGRPKG V P +SL P+  +LSEL+   V MA DCIG EV +    + +G V+LLEN+RFH EEE NDPEFAK+LA+L ++YVNDAFG+AHRAHASTEG+  F+  +VAG+L++KEL YL  A+  P++PF AI+GGSK+S KI V+E
Sbjct:    6 LSDITIQGKRILMRVDFNVPLNDEREITDDKRIVEALPSIRKILDNGGRLILMSHLGRPKGKVNPIFSLAPVAAKLSELIDTPVAMAEDCIGTEVMQSALALQDGEVMLLENLRFHPEEEANDPEFAKELAALGEMYVNDAFGTAHRAHASTEGITHFVPTAVAGYLIEKELMYLGKALEKPERPFVAILGGSKISGKIDVLE 208          
BLAST of CX292208 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 122/203 (60.10%), Postives = 152/203 (74.88%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIE 708
            L + D  GK VF RVD NVP+ D   ITD+ R++AA+PTIKYL   GA+V+L+SHLGRPKG V     L P+  RLSELLG EV+   +  G   ++ V  + +GGVLLLENVRF+  EEKNDPE AK  ASLAD++VNDAFG+AHRAHASTEG+A +L PS AGFLM+KELD L  A+SNP++PF A++GG+KV  KIGVI+
Sbjct:    6 LYDYDFAGKTVFCRVDFNVPMKDG-KITDETRIQAALPTIKYLSEQGARVLLASHLGRPKGEVVESLRLAPVATRLSELLGKEVQAVQEAHGPVAKQAVEGLEDGGVLLLENVRFYPGEEKNDPELAKAFASLADIFVNDAFGAAHRAHASTEGIAHYL-PSAAGFLMEKELDVLGKALSNPERPFTAVIGGAKVKDKIGVID 206          
The following BLAST results are available for this feature:
BLAST of CX292208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BORHD4.095e-6157.49Phosphoglycerate kinase OS=Borrelia hermsii (strai... [more]
PGK_CHLPD5.348e-6156.16Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_CHLL25.348e-6156.65Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_BACHK5.348e-6159.13Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACC35.348e-6159.13Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC05.348e-6159.13Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACAH5.348e-6159.13Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_CHLCH6.984e-6157.14Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]
PGK_PROVI9.122e-6155.67Phosphoglycerate kinase OS=Prosthecochloris vibrio... [more]
PGK_BACSK9.122e-6160.10Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC04011G05SK FlavFr1 Citrus clementina cDNA clone C04011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292208 ID=CX292208; Name=CX292208; organism=Citrus clementina; type=EST; length=709bp
AATCTTCGATCTCATTCCAAAATCTAACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAA
ACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTG
TTATTGAAT
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