CX292434

Overview
NameCX292434
Unique NameCX292434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 9.515e-43
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS TYP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.120e-42
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS TYP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP  + L  +++  F   +D+ ++V+S+M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLPEGD-LGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.055e-42
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.344e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.344e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.344e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.344e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.591e-40
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   81 SDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 554
            +  EH F+S  DAGAS TYP Q   +RK G++VIK+RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +++    EGKD  + V ++MGEE    +K+   K
Sbjct:    8 AQHEHTFDS-VDAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.680e-39
Identity = 77/142 (54.23%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 539
            DAGAS T+P Q   +RKNG++V+K  PCK+VE+S SKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX292434 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 73/126 (57.94%), Postives = 99/126 (78.57%), Query Frame = 3
Query:  114 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLV 491
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +++  +  G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CX292434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
IF5A2_HUMAN9.515e-4358.45Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK2.120e-4257.75Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT8.055e-4255.63Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT2.344e-4155.63Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE2.344e-4155.63Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN2.344e-4155.63Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN2.344e-4155.63Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_NEUCR2.591e-4053.16Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5AL_HUMAN1.680e-3954.23Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A1_CHICK1.204e-3757.94Eukaryotic translation initiation factor 5A-1 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionC04015F09SK FlavFr1 Citrus clementina cDNA clone C04015F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292434 ID=CX292434; Name=CX292434; organism=Citrus clementina; type=EST; length=569bp
GCTCGGTCGCCCCCCAGGCTATCTCAAAATCTCGCTCAGTAAATCGGCCG
AGTCGGAATCAGTCAGTGCTTAAAGCGATGTCGGACGAGGAGCATCACTT
CGAGTCAAAGGCCGATGCCGGAGCCTCCAAGACTTACCCACAGCAAGCTG
GTACCATCCGTAAGAACGGCTACATCGTCATCAAAAGCCGTCCCTGCAAG
GTTGTGGAAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTG
CCACTTTGTTGGAATTGATATCTTCAGTGGAAAGAAGCTGGAAGATATTG
TCCCCTCTTCTCATAACTGTGATGTTCCCCATGTCAACCGTACCGACTAT
CAGTTGATTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAA
TGGGAACACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGA
CCCAGCTCAAGGACGGTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTC
ATGTCTTCAATGGGCGAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCC
AAAGTCGTAGTTGCGCGAT
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