CX292436

Overview
NameCX292436
Unique NameCX292436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length232
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.056e-15
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K +TVF  R+P  IPW + G +YV+ESTGVFT               V+I+APSKDAPMFVVGVNE +Y  +L
Sbjct:   71 KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKYTSDL 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.056e-15
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            + VFG ++P  IPW + G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:   73 IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPDL 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.603e-15
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            KP+T+F  R+P  I W E GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.603e-15
Identity = 40/72 (55.56%), Postives = 44/72 (61.11%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 229
            K + VFG ++P  I W E GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   YKPE
Sbjct:   71 KAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPE 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.126e-14
Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 226
            KP+ VFG R+P  IPW  +GA+YVVESTGVFT               VIISAPS DAPM+V GVN   Y P
Sbjct:   71 KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.126e-14
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 226
            + VF +++P EI WAE GAEYV+ESTGVFT               V+ISAPS DAPM+V+GVNE +Y P
Sbjct:   79 IKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   70 KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:   71 KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          
BLAST of CX292436 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   14 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 232
            K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:   71 KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          
The following BLAST results are available for this feature:
BLAST of CX292436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
G3P_PICPA5.056e-1552.05Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_DEBHA5.056e-1552.11Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_MOUSE6.603e-1554.79Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_CRYNE6.603e-1555.56Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_OMPOL1.126e-1454.93Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P1_GLORO1.126e-1453.62Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_RAT1.471e-1453.42Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_FELCA1.471e-1453.42Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_COCP71.471e-1453.42Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM1.471e-1453.42Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015F12SK FlavFr1 Citrus clementina cDNA clone C04015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292436 ID=CX292436; Name=CX292436; organism=Citrus clementina; type=EST; length=232bp
TCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGG
AGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGA
GTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAA
GAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGG
GTGTCAATGAGCACGAGTACAAACCAGAGCTC
back to top