CX292440

Overview
NameCX292440
Unique NameCX292440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.617e-31
Identity = 67/165 (40.61%), Postives = 98/165 (59.39%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MAR FF+GGN+K NG+   +K+IV  LN A                       +  R +  ++AQN + +  GA+TGE S E + ++   WVILGHSERR   NE+++ V +K  +AL  G+KVI C+GETLE+++   T+ VV  Q +A+ EK+ +W NVV+AY
Sbjct:    1 MARTFFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNK-RKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.830e-31
Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   79 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERR--ALLNESNDFVGDKVAYALSR-GLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            NWKCN +  ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL    L VI C+GE LE+RESG T+AV   Q +A+++ IS+W +VV+AY
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAY 159          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 5.830e-31
Identity = 63/165 (38.18%), Postives = 101/165 (61.21%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MAR+FFVGGN+K NGT +++  I+  LN+A+                     ++  +    + AQN + +  GAFTGE  A  ++++   W + GHSERR ++ ES++F+ +K  +AL  G+KVI C+GETLE+R+ G T+ V A Q  A+++ +S+W N+V+AY
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPALYLGLAVEQNK-QPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 7.615e-31
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAY 546
            M RKFFVGGN+K NGT++ +  I++ LN A+                     + L      V+AQN + +  GAFTGE+S E L +  I W + GHSERR LL E ++FV  K   A++ GL VI C+GE+LE+RE+G T+ VV  Q  A+AE++S   W+ VV+AY
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAIYLVLA--RQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAY 165          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.615e-31
Identity = 67/165 (40.61%), Postives = 97/165 (58.79%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MAR FFVGGN+K NG+ + +K+IV  LN A+                       +      V AQN + +  GA+TGE S + + ++   WVILGHSERR   NE ++ V +K A+AL RG+ VI C+GETL+++++G T+ VV  Q   + EK+ +W NVV+AY
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAV-SLVSHPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.299e-30
Identity = 67/167 (40.12%), Postives = 99/167 (59.28%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAY 546
            M R+FFVGGN+K NGT+E +  I+  LNEA+                      +  +    V++QN + +  GAFTGE+S   L +  IPW I+GHSERR +L E+++F+  KV  A+  G+ VI C+GETLE+RE+  T+ VV +Q  A A++++   W  VV+AY
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAY 167          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.216e-30
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAY 546
            M RK FVGGNWK NG+   +     TL +A+                     K+       +AA+NC+    GAFTGE+S EM+ +    WVILGHSERR +  ESN+ +G+KV +AL  GL VI C+GE L +RE+G T  V   Q  AIA+ + +   WD VV+AY
Sbjct:    1 MTRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPACYLKYAQDKA--PKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAY 166          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.936e-30
Identity = 72/153 (47.06%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   91 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAY 546
            NG  ++V  IV TL +                       +S++     VAAQNCW    GAFTGE+S  M+ ++   WVILGHSERR +  E +D V +KVA+AL  GLKVIAC+GETLE+RE+G T  VV  QTKA+   I +NW NVVLAY
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYV--QSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAY 152          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 67/165 (40.61%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAY
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAY 164          
BLAST of CX292440 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 67/165 (40.61%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   52 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 546
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAY
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAY 164          
The following BLAST results are available for this feature:
BLAST of CX292440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_KLULA2.617e-3140.61Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_GRAVE5.830e-3144.03Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_CANAL5.830e-3138.18Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_PARBA7.615e-3142.51Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_ASHGO7.615e-3140.61Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_ASPOR1.299e-3040.12Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_TAESO2.216e-3041.67Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_HELVI4.936e-3047.06Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_PLAFA6.446e-3040.61Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF76.446e-3040.61Triosephosphate isomerase OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC04015G05SK FlavFr1 Citrus clementina cDNA clone C04015G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292440 ID=CX292440; Name=CX292440; organism=Citrus clementina; type=EST; length=548bp
GTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATTCAATCGTCGT
CATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACAT
CTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATGAAGCTGAAGTTCCT
TCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCC
TTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGTTGCCGCTCAAAATT
GCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATG
CTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAG
AGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATG
CACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAA
CAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGC
AATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGA
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