CX292443

Overview
NameCX292443
Unique NameCX292443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 3
Query:  195 WFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            WFT  +LELATNRF+  N L EGG+G V+RG L +G  VAVK+      Q ++EF  EVE +   +H+N+V L+G+C+E   R+LVYEY+ +G+L+  L+G
Sbjct:  170 WFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHG 270          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  165 KAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYGKF 503
            K P+     + + + EL+ AT+ FS+ + +  GG+G V++G LP G VVAVK+ +  S QG +EF +E+E+LS   HRN+V L+G+C + G+++LVYEY+ NGSL   L  +F
Sbjct:  608 KPPMNMESVKGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARF 720          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F +  +E AT++FS  N L +GGFG V++G LP+G  VAVK+    S QG++EF +EV V++  QHRN+V L+GFC+E  +++LVYE++ N SLD  L+
Sbjct:  328 FDFKVIEAATDKFSMCNKLGQGGFGQVYKGTLPNGVQVAVKRLSKTSGQGEKEFKNEVVVVAKLQHRNLVKLLGFCLEREEKILVYEFVSNKSLDYFLF 426          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  204 YAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            +  L+ AT+ FS  N L  GGFGSV++GV   GQ +AVK+    S QGD EF +E+ +L+  QHRN+V L+GFC+E  +R+LVYE+I N SLD+ ++
Sbjct:  351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIF 447          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = 3
Query:  213 LELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            + LATN FS  N L EGGFG+V++GVL  G+ +AVK+  + S QGD EF +EV +++  QHRN+V L+GFC++  +R+L+YE+  N SLD +++
Sbjct:  337 IRLATNDFSRDNQLGEGGFGAVYKGVLDYGEEIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIF 430          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            F+  ++++ATN F  AN + EGGFG V++G L DG ++AVKQ    S QG++EF +E+ ++S   H N+V L G CVE G+ LLVYE++ N SL   L+G
Sbjct:  612 FSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFG 711          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:   81 ISKSVREAVSLSRNKPPGPPPLC-----SICQHKAP---------VFGNPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            + K  R     S+N PPG  PL      S    KA                R FT AE+  AT  F +   +  GGFG V+RG L DG ++A+K+    S QG  EF +E+ +LS  +HR++V LIGFC E  + +LVYEY+ NG+L SHL+G
Sbjct:  455 LCKKRRSKSDESKNNPPGWRPLFLHVNNSTANAKATGGSLRLNTLAASTMGRKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFG 607          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 45/99 (45.45%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F ++ +E ATN+FSE+N L  GGFG V++G L  G+ VA+K+    S+QG +EF +EV+V++  QHRN+  L+G+C++  +++LVYE++ N SLD  L+
Sbjct:  335 FQFSAIEAATNKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVDVVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLF 433          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            FT  +++ ATN F   N + EGGFG V++GVL DG  +AVKQ    S QG++EF +E+ ++S  QH N+V L G C+E  + LLVYEY+ N SL   L+G
Sbjct:  655 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFG 754          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            FT  +++ ATN F   N + EGGFG V++GVL DG  +AVKQ    S QG++EF +E+ ++S  QH N+V L G C+E  + LLVYEY+ N SL   L+G
Sbjct:  657 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFG 756          
The following BLAST results are available for this feature:
BLAST of CX292443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
Y2296_ARATH8.204e-2248.51Probable receptor-like protein kinase At2g42960 OS... [more]
Y5374_ARATH1.828e-2143.36Probable LRR receptor-like serine/threonine-protei... [more]
CRK5_ARATH2.387e-2148.48Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]
CRK28_ARATH2.387e-2149.48Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
CRK41_ARATH3.118e-2148.94Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
Y1534_ARATH6.945e-2147.00Probable LRR receptor-like serine/threonine-protei... [more]
Y1357_ARATH6.945e-2139.87Probable receptor-like protein kinase At1g30570 OS... [more]
CRK25_ARATH6.945e-2145.45Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
Y5344_ARATH1.185e-2048.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH1.185e-2048.00Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC04015G08SK FlavFr1 Citrus clementina cDNA clone C04015G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292443 ID=CX292443; Name=CX292443; organism=Citrus clementina; type=EST; length=542bp
ATGAATTCCTGTTGGAGAAATTATCAACATTGAATCGAGAGCCTGATATC
GGAGTGCTGAATTATAAGCTTGATCTGAAAATAAGTAAAAGTGTGAGAGA
GGCAGTTTCATTATCCAGGAATAAACCTCCAGGTCCTCCTCCATTGTGTT
CAATATGTCAGCACAAGGCACCTGTATTTGGTAATCCTCCGAGGTGGTTC
ACCTATGCTGAATTGGAGCTTGCTACAAATAGATTTTCAGAAGCAAATTT
CTTGGCTGAAGGTGGATTTGGTTCTGTTCACCGAGGTGTTCTACCAGATG
GCCAGGTTGTTGCCGTCAAGCAATATAAATTGGCTAGTTCTCAAGGTGAT
CAAGAATTTTGCTCAGAAGTTGAGGTTTTAAGTTGTGCACAACATCGCAA
TGTTGTGATGTTGATTGGATTCTGTGTGGAGGATGGGAAGAGATTGCTGG
TTTATGAGTATATTTGCAATGGGTCCTTGGATTCCCATCTTTATGGTAAA
TTCAACTTTATCCTAAATGGTTTTATAATTTACACTAACGTT
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