CX292443

Overview
NameCX292443
Unique NameCX292443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYK--LASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F  ++L+ AT  FS  N L EG  G V+R    DG+ +AVK+    L  S   +     V  LS  +H+N+  L+G+C E G  +LVYEY  NGSL   L+
Sbjct:  392 FELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLH 492          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: IRAK1_HUMAN (Interleukin-1 receptor-associated kinase 1 OS=Homo sapiens GN=IRAK1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  129 PGPPPLCSICQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYK----LASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            PGP    S+ Q   P     P  +   E+   T+ FSE   + EGGFG V+R V+ +  V AVK+ K    L  +   Q F +EVE LS  +H N+V   G+C ++G   LVY ++ NGSL+  L+
Sbjct:  181 PGPESSVSLLQGARPF----PFCWPLCEISRGTHNFSEELKIGEGGFGCVYRAVMRN-TVYAVKRLKENADLEWTAVKQSFLTEVEQLSRFRHPNIVDFAGYCAQNGFYCLVYGFLPNGSLEDRLH 301          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  174 VFGNPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            +F  P       +L  ATN FS  N       G  ++  LPDG  +AVK+   A   G+++F SE+  L   +H N+V L+G+CV + +RLLVY+++ NG+L S L+
Sbjct:  281 LFQKPIVKIKLGDLMAATNNFSSGNIDVSSRTGVSYKADLPDGSALAVKRLS-ACGFGEKQFRSEMNKLGELRHPNLVPLLGYCVVEDERLLVYKHMVNGTLFSQLH 386          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYGKFNFIL 515
            R ++Y EL  AT +F     L  G  G+V++GVL D + VAVK+ +    QG + F +E+ V+    H N+V + GFC E   RLLV EY+ NGSL + L+ +   IL
Sbjct:  522 RRYSYRELVKATRKFKVE--LGRGESGTVYKGVLEDDRHVAVKKLENVR-QGKEVFQAELSVIGRINHMNLVRIWGFCSEGSHRLLVSEYVENGSLANILFSEGGNIL 626          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  201 TYAELELATNRFSEANFLAEGGFGSVHRGVL-PDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVE-----DGKRLLVYEYICNGSLDSHL 491
            +Y EL  AT+RFS  N +  G FG+V +G+L P+ ++VAVK   L      + F +E E     +HRN+V LI  C       +  R LVYE++  GSLD  L
Sbjct:  701 SYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAECETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWL 803          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  237 SEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            + AN +  G  G V+R  +P G+ +AVK  K+ S +    F SE++ L   +HRN+V L+G+C     +LL Y+Y+ NGSL S L+G
Sbjct:  761 TSANVIGTGSSGVVYRITIPSGESLAVK--KMWSKEESGAFNSEIKTLGSIRHRNIVRLLGWCSNRNLKLLFYDYLPNGSLSSRLHG 845          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQY--KLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F+ A+L+   + FS    L EG  G V++    DG+  AVK+    L      +EF   V  +S   H+N+  L+G+C E G+ +LVYEY  +GSL   L+
Sbjct:  403 FSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLH 503          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 31/97 (31.96%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  201 TYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHL 491
            T+  +  AT  F+ +N +  GGFG+ ++  +    VVA+K+  +   QG Q+F +E++ L   +H N+V LIG+   + +  LVY Y+  G+L+  +
Sbjct:  863 TFDNVVRATGNFNASNLIGNGGFGATYKAEISQDVVVAIKRLSIGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFI 959          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  165 KAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKL-------ASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDG--KRLLVYEYICNGSLDSHLYG 497
            ++ ++  P   FT  ++  AT  F ++  +  G  G+V++ V+P G+ +AVK+ +         S+  D  F +E+  L   +HRN+V L  FC   G    LL+YEY+  GSL   L+G
Sbjct:  796 ESDIYFVPKERFTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHG 915          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: IRAK1_MOUSE (Interleukin-1 receptor-associated kinase 1 OS=Mus musculus GN=Irak1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3
Query:  129 PGPPPLCSICQHKAPVFG-----NPPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYK----LASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            P   P  +    ++PV G       P  + + E+   T  FSE   + EGGFG V+R V+ +    AVK+ K    L  +   Q F +EVE LS  +H N+V   G+C E G   LVY ++ NGSL+  L+
Sbjct:  172 PSSAPSSTKSSPESPVSGLQRAHPSPFCWPFCEISQGTCNFSEELRIGEGGFGCVYRAVMRN-TTYAVKRLKEEADLEWTMVKQSFLTEVEQLSRFRHPNIVDFAGYCAESGLYCLVYGFLPNGSLEDQLH 301          
The following BLAST results are available for this feature:
BLAST of CX292443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
SRF5_ARATH2.645e-1239.60Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
IRAK1_HUMAN3.455e-1237.30Interleukin-1 receptor-associated kinase 1 OS=Homo... [more]
Y1719_ARATH5.893e-1237.38Probable inactive receptor kinase At1g27190 OS=Ara... [more]
KPRO_MAIZE1.005e-1140.74Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
EFR_ARATH1.005e-1139.81LRR receptor-like serine/threonine-protein kinase ... [more]
Y4265_ARATH1.715e-1140.23Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH2.925e-1135.64Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
RPK2_ARATH2.925e-1131.96LRR receptor-like serine/threonine-protein kinase ... [more]
Y2317_ARATH4.989e-1131.67Probable leucine-rich repeat receptor-like protein... [more]
IRAK1_MOUSE4.989e-1135.11Interleukin-1 receptor-associated kinase 1 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC04015G08SK FlavFr1 Citrus clementina cDNA clone C04015G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292443 ID=CX292443; Name=CX292443; organism=Citrus clementina; type=EST; length=542bp
ATGAATTCCTGTTGGAGAAATTATCAACATTGAATCGAGAGCCTGATATC
GGAGTGCTGAATTATAAGCTTGATCTGAAAATAAGTAAAAGTGTGAGAGA
GGCAGTTTCATTATCCAGGAATAAACCTCCAGGTCCTCCTCCATTGTGTT
CAATATGTCAGCACAAGGCACCTGTATTTGGTAATCCTCCGAGGTGGTTC
ACCTATGCTGAATTGGAGCTTGCTACAAATAGATTTTCAGAAGCAAATTT
CTTGGCTGAAGGTGGATTTGGTTCTGTTCACCGAGGTGTTCTACCAGATG
GCCAGGTTGTTGCCGTCAAGCAATATAAATTGGCTAGTTCTCAAGGTGAT
CAAGAATTTTGCTCAGAAGTTGAGGTTTTAAGTTGTGCACAACATCGCAA
TGTTGTGATGTTGATTGGATTCTGTGTGGAGGATGGGAAGAGATTGCTGG
TTTATGAGTATATTTGCAATGGGTCCTTGGATTCCCATCTTTATGGTAAA
TTCAACTTTATCCTAAATGGTTTTATAATTTACACTAACGTT
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