CX292443

Overview
NameCX292443
Unique NameCX292443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.448e-18
Identity = 45/99 (45.45%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F ++ L+ AT+ FS  N L EGGFG+V++GVL DGQ +AVK+    + QG+ EF +E  +++  QHRN+V L+G+ +E  +RLLVYE++ + SLD  ++
Sbjct:  332 FDFSVLQDATSHFSLENKLGEGGFGAVYKGVLSDGQKIAVKRLSKNAQQGETEFKNEFLLVAKLQHRNLVKLLGYSIEGTERLLVYEFLPHTSLDKFIF 430          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            R F+  ELE AT+ FSE+  L +GG G+V++G+L DG+ VAVK+ K+      +EF +EV +LS   HR+VV L+G C+E     LVYE+I NG+L  H++
Sbjct:  437 RIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIH 537          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCV-----EDGKRLLVYEYICNGSLDSHLYG 497
            F++ E++ ATN FS  N +  GG+G+V +G LPDG  VA K++K  S+ GD  F  EVEV++  +H N++ L G+C      E  +R++V + + NGSL  HL+G
Sbjct:  271 FSFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRFKNCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFG 375          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQV-VAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            R F++AE++ AT  F E+  L  GGFG V+RG +  G   VA+K+    S QG  EF +E+E+LS  +HR++V LIG+C E+ + +LVY+Y+ +G++  HLY
Sbjct:  522 RHFSFAEIKAATKNFDESRVLGVGGFGKVYRGEIDGGTTKVAIKRGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLY 623          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  204 YAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            Y  ++ ATN F+E+N +  GGFG V++G   +G+ VAVK+    S QG+ EF +EV V++  QHRN+V L+GF ++  +R+LVYEY+ N SLD  L+
Sbjct:  343 YRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF 439          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  204 YAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            Y  ++ ATN F+E+N +  GGFG V++G   +G+ VAVK+    S QG+ EF +EV V++  QHRN+V L+GF ++  +R+LVYEY+ N SLD  L+
Sbjct:  341 YRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF 437          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            R F   ELE AT  FSE   L  GG G+V++G+L DG+ VAVK+ K+      QEF +EV +LS   HR+VV L+G C+E    +LVYE+I NG+L  H++
Sbjct:  439 RVFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIINGNLFKHIH 539          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQ-EFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHL 491
            F+  EL++AT+ FS  N L  GGFG V++G L DG +VAVK+ K   + G + +F +EVE++S A HRN++ L GFC+   +RLLVY Y+ NGS+ S L
Sbjct:  293 FSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 391          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPD-GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F + EL  AT  F    FL EGGFG V++G L   GQVVAVKQ      QG++EF  EV +LS   H N+V LIG+C +  +RLLVYE++  GSL+ HL+
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLH 173          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.226e-18
Identity = 45/113 (39.82%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYGKFNFILNGFIIYT 536
            F   ++E AT+ F  +N + +GGFG V++G L +G  VAVK+    S QG+ EF +EV +++  QHRN+V L+GF ++  +++LV+E++ N SLD  L+G  N    G + +T
Sbjct:  334 FDIKDIEAATSNFLASNKIGQGGFGEVYKGTLSNGTEVAVKRLSRTSDQGELEFKNEVLLVAKLQHRNLVRLLGFALQGEEKILVFEFVPNKSLDYFLFGSTNPTKKGQLDWT 446          
The following BLAST results are available for this feature:
BLAST of CX292443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
CRK26_ARATH1.448e-1845.45Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
WAKLK_ARATH1.891e-1846.53Putative wall-associated receptor kinase-like 11 O... [more]
RKF3_ARATH1.891e-1841.90Probable LRR receptor-like serine/threonine-protei... [more]
FERON_ARATH1.891e-1844.12Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
CRK8_ARATH1.891e-1846.39Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK6_ARATH1.891e-1846.39Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
WAKLN_ARATH2.470e-1847.52Wall-associated receptor kinase-like 18 OS=Arabido... [more]
SERK2_ARATH2.470e-1848.48Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
PBS1_ARATH2.470e-1850.00Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
CRK30_ARATH3.226e-1839.82Putative cysteine-rich receptor-like protein kinas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04015G08SK FlavFr1 Citrus clementina cDNA clone C04015G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292443 ID=CX292443; Name=CX292443; organism=Citrus clementina; type=EST; length=542bp
ATGAATTCCTGTTGGAGAAATTATCAACATTGAATCGAGAGCCTGATATC
GGAGTGCTGAATTATAAGCTTGATCTGAAAATAAGTAAAAGTGTGAGAGA
GGCAGTTTCATTATCCAGGAATAAACCTCCAGGTCCTCCTCCATTGTGTT
CAATATGTCAGCACAAGGCACCTGTATTTGGTAATCCTCCGAGGTGGTTC
ACCTATGCTGAATTGGAGCTTGCTACAAATAGATTTTCAGAAGCAAATTT
CTTGGCTGAAGGTGGATTTGGTTCTGTTCACCGAGGTGTTCTACCAGATG
GCCAGGTTGTTGCCGTCAAGCAATATAAATTGGCTAGTTCTCAAGGTGAT
CAAGAATTTTGCTCAGAAGTTGAGGTTTTAAGTTGTGCACAACATCGCAA
TGTTGTGATGTTGATTGGATTCTGTGTGGAGGATGGGAAGAGATTGCTGG
TTTATGAGTATATTTGCAATGGGTCCTTGGATTCCCATCTTTATGGTAAA
TTCAACTTTATCCTAAATGGTTTTATAATTTACACTAACGTT
back to top