CX292757

Overview
NameCX292757
Unique NameCX292757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 416
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 416
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 416
            F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 497
            F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS    S    ++C  +    CP+    P
Sbjct:   24 FTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFSC---STGDALQCRDS---SCPDAYHQP 149          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 66/146 (45.21%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 512
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 512
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CX292757 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 65/146 (44.52%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   93 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 512
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC  +    CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRDS---GCPDAYHHPNDVATHACNG 159          
The following BLAST results are available for this feature:
BLAST of CX292757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1C_HORVU4.075e-2551.38Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU4.075e-2551.38Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT6.951e-2552.29Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA1.549e-2445.59Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA1.449e-2245.21Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA3.229e-2244.52Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST3_AVESA4.217e-2244.52Thaumatin-like pathogenesis-related protein 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC04019B11SK FlavFr1 Citrus clementina cDNA clone C04019B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292757 ID=CX292757; Name=CX292757; organism=Citrus clementina; type=EST; length=660bp
ATTATCCTCTCCAAATGAAGTTCGTTAAAGCTCTTCCCATTTCTTCTGCT
CTTCTTATTATCATTTCCATCACCCTGACTCATGCTGCCAAATTCGATAT
CACAAACAATTGCCCCGACACCGTCTGGGCCGCCGCTGTGCCCGGAGGCG
GCAGGCAACTCGACAAGGGTCAAACATGGACCATCACCGCCGAGCCAGGC
ACAAAAGCAGCCCGCATTTGGGCTCGAACCAAATGCCAGTTTGATGCTTC
CGGCAAAGGCAAATGCGAGACCGGTGACTGTAACGGACTCCTCGAGTGCC
AAGGCTACGGTGCAGCACCTAACACCTTGGCCGAGTACGCGTTGAAGCAA
TTTAATGACATGGATTTCATTGACATGTCCAACATTGACGGATTCAATGT
TCCCATGGAATTTAGCTCTGTCTCTCCCTCATGCAACCGCGTGATCAAGT
GCACTGCTAACATTCTTGGCGAGTGCCCGAATGAATTGAAGGTTCCTGGA
GGATGTAACGGGCCGTGCCCCGTGTTCAAGACCGACGAGTACTGTTGCAA
TTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAAGGATAGGT
GCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCACATTTACT
TGCCCGACTG
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