CX292784

Overview
NameCX292784
Unique NameCX292784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD4_PONAB (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4 OS=Pongo abelii GN=PLCD4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  154 VKSMFDQYSENGT-MTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLF---GDI-NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            V+ +F+ +S +G  +T+     FL E QKE   + E A  +ID         + H   L+++ F  YL    GDI NP   P   ++ DMT P++HYFI + HN+YL G+QL    S    IRAL++G R +E+D+W     + V V HG
Sbjct:  208 VQELFESFSADGQKLTLLEFLDFLREEQKERDCTSELALELIDHYEPSDSGKLRHV--LSMDGFLSYLCSKDGDIFNPACLP---IYQDMTQPLNHYFICSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDVWDGPSGEPV-VYHG 351          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD4_HUMAN (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4 OS=Homo sapiens GN=PLCD4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  154 VKSMFDQYSENGT-MTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLF---GDI-NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            V+ +F+ +S +G  +T+     FL E QKE   + E A  +ID         + H   L+++ F  YL    GDI NP   P   ++ DMT P++HYFI + HN+YL G+QL    S    IRAL++G R +E+D+W     + V V HG
Sbjct:  208 VQELFESFSADGQKLTLLEFLDFLQEEQKERDCTSELALELIDRYEPSDSGKLRHV--LSMDGFLSYLCSKDGDIFNPACLP---IYQDMTQPLNHYFICSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDVWDGPSGEPV-VYHG 351          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD4_BOVIN (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4 OS=Bos taurus GN=PLCD4 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 53/150 (35.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  154 VKSMFDQYSENGT-MTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLF---GDI-NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            V+ +F+++S +G  +T+     FL E QKE + + + A  +ID     +   + H   L+++ F  YL    GDI NP   P   ++ DMT P++HY+I + HN+YL G+QL    S    IRAL++G R +E+DIW     + + V HG
Sbjct:  208 VQELFEKFSSDGQKLTLLEFVDFLQEEQKEGERASDLALELIDRYEPSESGKLRHV--LSMDGFLGYLCSKDGDIFNPTCHP---LYQDMTQPLNHYYINSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDIWDGPSGEPI-VYHG 351          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLD3A_DANRE (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-3-A OS=Danio rerio GN=plcd3a PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  160 SMFDQYSENG-TMTVDHLHRFLIEVQKEDKASKEDAQAIIDS--LRELKHLNIFHRRGLNLEAFFKYLFGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            ++F  YS NG  +T   L  FL + Q ED AS   A+++I +  L +    N+F    +    F  Y+    N   +P    V+ DM+ P++HY+I + HN+YLT +Q+ S  S  P IRAL +G R +ELD W   K + + + HG
Sbjct:  235 AVFRHYSGNGCVLTTLELRDFLGD-QGED-ASLVHAKSLIQTFELNDWAQKNLF----MTQNGFTMYMLSKENDVFNPDHTHVYQDMSKPLAHYYISSSHNTYLTKDQVTSASSTEPYIRALNQGCRCVELDCWDGDKGEPI-IYHG 374          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PIP1_DROME (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase classes I and II OS=Drosophila melanogaster GN=Plc21C PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  154 VKSMFDQY---SENGTMTVDHLHRFLIEVQKEDK--------ASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLFGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            V+ +FD     S+   M++  L  FL + Q++ +        A+   A+ +I      K      +  L+L+ F +YL GD NP ++P+ + +  DM  P+SHYFI + HN+YLTG+QL    S     + L  G R +ELD W N + +   ++HG
Sbjct:  226 VERLFDSIVGNSKRKCMSIAQLVEFLNKTQRDPRLNEILYPYANPARAKELIQQYEPNKFNA--QKGQLSLDGFLRYLMGDDNPIMAPSKLDLCDDMDQPMSHYFINSSHNTYLTGHQLTGKSSVEIYRQCLLAGCRCVELDFW-NGRTEEPVIVHG 379          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCB2_RAT (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2 OS=Rattus norvegicus GN=Plcb2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  193 MTVDHLHRFLIEVQKEDK--------ASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLFGDINPPLS-PTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHGGYDL 600
            MT +HL +F+ + Q++ +        A  E  QA+ID   E   +N+  R  L+ E    +L G  N  L+  T  +H DMT P++HYFI + HN+YLT  Q +   S     + L  G R +ELD W     D   ++  G+ +
Sbjct:  236 MTKEHLTKFINQKQRDPRLNSLLFPPARPEQVQALIDKY-EPSGINV-QRGQLSPEGMVWFLCGPENSVLAHDTLRIHQDMTQPLNHYFINSSHNTYLTAGQFSGPSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 378          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD9_ARATH (Phosphoinositide phospholipase C 9 OS=Arabidopsis thaliana GN=PLC9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  220 LIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLN---LEAFFKYLFG-DINPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDV-PIIRALQKGVRVIELDIWPNSK 561
            L++ +K++  +  +A   ID   + +  +I   R L    L    ++LF  ++NPP+S   V H DM AP+SHYFI+T   SY TGN +      + PII AL++GVRV+ELD+ P  K
Sbjct:   44 LLDTEKDEDGAGLNAAEQIDRELKSRKCDILKFRNLTILELPHLNEFLFSTELNPPISDQ-VRHRDMNAPLSHYFIHTSLKSYFTGNNVFGRLYSIEPIIDALKQGVRVVELDLLPFGK 161          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD4_RAT (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4 OS=Rattus norvegicus GN=Plcd4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  154 VKSMFDQYS-ENGTMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLF---GDI-NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            ++ +F+ +S +   +T+     FL E QKE   S + A  +ID     ++  +   R L+ + F  YL    G+I NP   P   ++ DMT P+SHY+I + HN+YL G+Q     S    IRAL++G R +E+D W     + V V HG
Sbjct:  208 IEELFENFSSDKQKLTLLEFVDFLREEQKESDHSSDLALKLIDRYEPSENGRLL--RVLSKDGFLSYLCSADGNIFNPDCLP---IYQDMTQPLSHYYINSSHNTYLLGDQFCGQSSVEGYIRALKRGCRCVEVDTWDGPDGEPV-VYHG 351          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCD4_MOUSE (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4 OS=Mus musculus GN=Plcd4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  154 VKSMFDQYS-ENGTMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLFG-DINPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHG 588
            ++ +F+ +S +   +T+     FL + QKE   + + A  +ID     ++  + H   L+ + F KYL   D N   S    ++ DMT P+SHY+I + HN+YL G+QL    S    IRAL++G R +E+D W     + V V HG
Sbjct:  208 IEEIFEDFSSDKQKLTLLEFVDFLRKEQKEKDHAPDLALELIDRYEPSENGRLLHV--LSKDGFLKYLCSKDGNIFNSDCLPIYQDMTQPLSHYYINSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDTWDGPDGEPV-VYHG 351          
BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCB2_MOUSE (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2 OS=Mus musculus GN=Plcb2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 46/145 (31.72%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  193 MTVDHLHRFLIEVQKEDK--------ASKEDAQAIIDSLRELKHLNIFHRRGLNLEAFFKYLFGDINPPLS-PTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHGGYDL 600
            MT +HL +F+ + Q++ +        A  E  Q +ID   E   +N+  R  L+ E    +L G  N  L+  T ++H DMT P++HYFI + HN+YLT  Q +   S     + L  G R +ELD W     D   ++  G+ +
Sbjct:  236 MTKEHLTKFINQKQRDPRLNSLLFPPARPEQVQVLIDKY-EPSGINV-QRGQLSPEGMVWFLCGPENSVLAHDTLLIHQDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 378          
The following BLAST results are available for this feature:
BLAST of CX292784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PLCD4_PONAB9.802e-1536.671-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCD4_HUMAN9.802e-1536.671-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCD4_BOVIN2.184e-1435.331-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLD3A_DANRE9.175e-1335.371-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PIP1_DROME1.198e-1231.851-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCB2_RAT2.669e-1232.411-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCD9_ARATH3.486e-1238.66Phosphoinositide phospholipase C 9 OS=Arabidopsis ... [more]
PLCD4_RAT3.486e-1234.001-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCD4_MOUSE4.553e-1233.331-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]
PLCB2_MOUSE5.947e-1231.721-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]

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Properties
Property NameValue
Genbank descriptionC04019E03SK FlavFr1 Citrus clementina cDNA clone C04019E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292784 ID=CX292784; Name=CX292784; organism=Citrus clementina; type=EST; length=706bp
AATTCACAATCCCAAAACATTTTCAACATTCCCATCACTTTCACAGATTA
CCCTTTACTCAATCACGCGTTTGTCATGTCTAAACAGACTTACAGAGTCT
GCTTCTGCTTCCGGCGGCGGTTCCACGTCGCCGCATCGGAGGCGCCGGAC
GCCGTCAAGTCCATGTTCGATCAGTACTCCGAGAATGGCACCATGACGGT
CGATCACCTTCACCGCTTCTTGATCGAGGTTCAGAAAGAAGATAAAGCCT
CCAAAGAAGACGCGCAAGCGATCATCGATAGCTTGCGCGAGCTCAAGCAC
CTGAATATCTTTCATCGCAGGGGCCTCAATCTTGAAGCTTTCTTTAAGTA
CCTCTTCGGTGATATTAATCCTCCGCTTTCGCCTACTCCAGTGGTGCATC
ATGATATGACTGCCCCGGTGTCTCATTACTTTATATATACTGGCCACAAT
TCCTATCTGACTGGTAATCAGCTTAATAGTGACTGCAGCGACGTTCCCAT
CATACGTGCCCTGCAGAAAGGGGTGAGAGTGATTGAGTTGGATATATGGC
CAAATTCGAAGAAAGATAATGTGGATGTTCTTCATGGAGGGTATGATTTA
TGTGCAATTGTTGCCACCCTGTGGACATAGTACATTTTTGGAATCAAGCA
TTCTAAACGCACCTTTCTGTAGTTTCTAACAGTGAGCATTTGTAGTCTTG
TCATGC
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