CX292784

Overview
NameCX292784
Unique NameCX292784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292784 vs. ExPASy Swiss-Prot
Match: PLCB1_BOVIN (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus GN=PLCB1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 42/146 (28.77%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:  193 MTVDHLHRFLIEVQKEDKASK--------EDAQAIIDSLRELKHLNIFHRRG-LNLEAFFKYLFGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHGGYDL 600
            +TVD +  F+   Q++ + ++        E  Q +I+   + +  N   ++G ++++ F +YL G+ N  +SP  + ++ DM+ P+SHYFI + HN+YLT  QL  + S     + L  G R +ELD W     +   V+  G+ +
Sbjct:  240 LTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIE---KYEPNNSLAKKGQISVDGFMRYLSGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTAGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 382
The following BLAST results are available for this feature:
BLAST of CX292784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PLCB1_BOVIN8.587e-1128.771-phosphatidylinositol-4,5-bisphosphate phosphodie... [more]

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Properties
Property NameValue
Genbank descriptionC04019E03SK FlavFr1 Citrus clementina cDNA clone C04019E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292784 ID=CX292784; Name=CX292784; organism=Citrus clementina; type=EST; length=706bp
AATTCACAATCCCAAAACATTTTCAACATTCCCATCACTTTCACAGATTA
CCCTTTACTCAATCACGCGTTTGTCATGTCTAAACAGACTTACAGAGTCT
GCTTCTGCTTCCGGCGGCGGTTCCACGTCGCCGCATCGGAGGCGCCGGAC
GCCGTCAAGTCCATGTTCGATCAGTACTCCGAGAATGGCACCATGACGGT
CGATCACCTTCACCGCTTCTTGATCGAGGTTCAGAAAGAAGATAAAGCCT
CCAAAGAAGACGCGCAAGCGATCATCGATAGCTTGCGCGAGCTCAAGCAC
CTGAATATCTTTCATCGCAGGGGCCTCAATCTTGAAGCTTTCTTTAAGTA
CCTCTTCGGTGATATTAATCCTCCGCTTTCGCCTACTCCAGTGGTGCATC
ATGATATGACTGCCCCGGTGTCTCATTACTTTATATATACTGGCCACAAT
TCCTATCTGACTGGTAATCAGCTTAATAGTGACTGCAGCGACGTTCCCAT
CATACGTGCCCTGCAGAAAGGGGTGAGAGTGATTGAGTTGGATATATGGC
CAAATTCGAAGAAAGATAATGTGGATGTTCTTCATGGAGGGTATGATTTA
TGTGCAATTGTTGCCACCCTGTGGACATAGTACATTTTTGGAATCAAGCA
TTCTAAACGCACCTTTCTGTAGTTTCTAACAGTGAGCATTTGTAGTCTTG
TCATGC
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