CX292822

Overview
NameCX292822
Unique NameCX292822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.566e-25
Identity = 64/159 (40.25%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    4 CETGDC-NGLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            C T DC +G + C G GA P  TLAE+ +      DF D+S +DGFN+PM   SV+P       +   C AN+   CP+EL+  G       C   C  F T +YCC         C PT +S+ F + CPD YSY  DD   TFTC  G +Y + FCP
Sbjct:   90 CATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPM---SVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 63/159 (39.62%), Postives = 81/159 (50.94%), Query Frame = 1
Query:    4 CETGDC-NGLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            CET DC +G + C G GA P  TL E  +      D+ D+S +DGFN+PM   SV+P       +   C AN+   CP +L+V         C   C  F   +YCC   N     C PT +S+ F+ +CP  YSY  DD  STFTC  G DY + FCP
Sbjct:   57 CETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---SVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.312e-24
Identity = 63/159 (39.62%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    4 CETGDC-NGLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            CET DC +G + C G GA P  TL E  +      D+ D+S +DGFN+PM   SV+P       +   C AN+   CP  L+V         C   C  F   +YCC   N     C PT +S+ F+ +CP  YSY  DD  STFTC  G DY + FCP
Sbjct:   91 CETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---SVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.726e-24
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    4 CETGDCN-GLLECQGY-GAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCN-----SGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            CET DC+ G L C G  G  P TLAE+ +      DF D+S +DGFN+PM   SV+P       ++  C AN+   CP+EL+  G       C   C  F   +YCC         C PT +S+ F ++CPD YSY  DD    FTC  G +Y + FCP
Sbjct:   87 CETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPM---SVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 64/159 (40.25%), Postives = 79/159 (49.69%), Query Frame = 1
Query:    4 CETGDC-NGLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            C T DC +G + C G GAAP  TL E  +      DF D+S +DGFN+PM   SV+P       +   C A+I   CP  L+V G       C   C  F   +YCC   N     C P  +SK FK +CP  YSY  DD +STFTC     Y + FCP
Sbjct:   91 CATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPM---SVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.268e-22
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    4 CETGDCNGLLECQGYG-AAPNTLAEYALKQFN-DMDFIDMSNIDGFNVPMEFSSVSPSCNR----VIKCTANILGECPNELKVPG--------GCNGPCPVFKTDEYCCNSG-----NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFC 426
            C TGDC G +EC G G AAP TLA++ L   + D     +S +DGFN+P+   +V+P   +    V+ C AN+L  CP  L+           GC   C  FK+DE+CC +       C P+ +S+FFK  CP  ++Y  D  +    C +  + KV+FC
Sbjct:   95 CATGDCGGRIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPL---TVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFC 251          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 62/157 (39.49%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    4 CETGDCNGLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS--CNRVIKCTANILGECPNELKVPG-------GCNGPCPVFKTDEYCC-----NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            C TGDC G L C G G  P  TLAE  L    ++DF D+S +DG+N+ M    V  S  C+    C +++   CP  L+V          C   C  F + +YCC     N  +C PT +SK FK  CP  YSY  DD TS  TC +  +Y V FCP
Sbjct:   87 CATGDCGGSLSCNGAGGEPPATLAEITLGP--ELDFYDVSLVDGYNLAMSIMPVKGSGQCSYA-GCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATC-SKANYIVTFCP 239          
BLAST of CX292822 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 60/156 (38.46%), Postives = 73/156 (46.79%), Query Frame = 1
Query:    4 CETGDCNGLLECQGY-GAAPNTLAEYAL-KQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN-RVIKCTANILGECPNELKVP------GGCNGPCPVFKTDEYCCNS-----GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 429
            C TGDC G+L C G  GA P T+ E  L    + M F D+S +DGFN P+  ++V          C A++   CP+ L+V        GC   C     D YCC         C PT FS  FK  CP  YSY  DDATS   C     Y + FCP
Sbjct:   95 CATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRC-HAKRYLITFCP 249          
The following BLAST results are available for this feature:
BLAST of CX292822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP_PRUAV3.566e-2540.25Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1B_MALDO1.038e-2439.62Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TP1A_MALDO2.312e-2439.62Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP2_PRUPE6.726e-2439.62Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TLP1_PRUPE8.784e-2440.25Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
OLP1_SOLLC1.268e-2236.25Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.402e-2139.49Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLPH_ORYSJ7.696e-2038.46Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC04019H08SK FlavFr1 Citrus clementina cDNA clone C04019H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292822 ID=CX292822; Name=CX292822; organism=Citrus clementina; type=EST; length=610bp
AAATGCGAGACCGGTGACTGTAACGGACTCCTCGAGTGCCAAGGCTACGG
TGCAGCACCTAACACCTTGGCCGAGTACGCGTTGAAGCAATTCAATGACA
TGGATTTCATTGACATGTCCAACATTGACGGATTCAATGTTCCCATGGAA
TTTAGCTCTGTCTCTCCCTCATGCAACCGCGTGATCAAGTGCACTGCTAA
CATTCTTGGCGAGTGCCCGAATGAATTGAAGGTTCCTGGAGGATGTAACG
GGCCGTGCCCCGTGTTCAAGACCGACGAGTACTGTTGCAATTCAGGCAAC
TGCGGACCTACAGGTTTCTCCAAGTTTTTCAAGGATAGGTGCCCGGATGT
TTACAGTTACCCTAAGGATGACGCTACCAGCACATTTACTTGCCCGACTG
GGACAGACTACAAGGTTGTATTCTGCCCCTGAAGCATTTTTTTTCAGGGG
TAGAAATGGAAATAGAAAACTATACGACATAGCCTTCTATATCTGTTATA
ATATTGGAATAAGGACCGTGTGGTCTTCACTGCCATAGAGCTGGAGCAGG
CACATGTAGTTATGTGCGTGTATGAACTATAATTTGTTCGTGAATTAAAA
GGAGAATAAC
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