CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  248 GPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  248 GPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCGI (Riboflavin biosynthesis protein ribBA OS=Mycobacterium gilvum (strain PYR-GCK) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 504
            G  GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH + GL+
Sbjct:  248 GPHGDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGHDLVGLD 409          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBT (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  248 GPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  248 GPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBO (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  248 GPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACWK (Riboflavin biosynthesis protein ribBA OS=Bacillus weihenstephanensis (strain KBAB4) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 102/161 (63.35%), Postives = 129/161 (80.12%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK +K+GH+  L
Sbjct:  238 KGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVTERVPLQMPTKEENKTYLQTKASKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCVP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 105/162 (64.81%), Postives = 125/162 (77.16%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 504
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH + GLE
Sbjct:  248 GPHSDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGHDLVGLE 409          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCUA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium ulcerans (strain Agy99) GN=ribBA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 103/156 (66.03%), Postives = 121/156 (77.56%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+ Y LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  248 GPNSDGDDVLVRVHSECLTGDVFGSRRCDCGSQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQTYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BREBN (Riboflavin biosynthesis protein ribBA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ribBA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 107/161 (66.46%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +G+IG  + ILVRVHSECLTGDIFGS RCDCG QL  A++QIEA GRG+L+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG   D R+YGIGAQ+LRDLGV+ M+L+TNNP K  GL GYGLAV  RVPL TP    NK+YL TK+ K+GH+  L
Sbjct:  238 KGEIGPDEPILVRVHSECLTGDIFGSYRCDCGPQLHAALEQIEANGRGILLYMR-QEGRGIGLINKLRAYKLQEEGLDTVEANEKLGFAADLRDYGIGAQILRDLGVQRMRLLTNNPRKIRGLTGYGLAVEERVPLQTPEHLHNKQYLSTKQEKLGHLLHL 397          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_MYCTU3.993e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTA3.993e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCGI3.993e-5564.20Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBT3.993e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBP3.993e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBO3.993e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_BACWK3.993e-5563.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_MYCVP6.811e-5564.81Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCUA6.811e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_BREBN8.895e-5566.46Riboflavin biosynthesis protein ribBA OS=Brevibaci... [more]

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Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
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