CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC4 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain B4264) GN=ribBA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.415e-54
Identity = 102/161 (63.35%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDISTGEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKSYLQTKVNKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC2 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain G9842) GN=ribBA PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 102/161 (63.35%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDISIGEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVVERVPLQMPAKEENKSYLQTKVNKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC1 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 10987) GN=ribBA PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.766e-54
Identity = 102/161 (63.35%), Postives = 127/161 (78.88%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCQ (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain Q1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 102/161 (63.35%), Postives = 126/161 (78.26%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G  +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDISTGDPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCN (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ribBA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GD+   + +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L +  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDVSTDEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALTQIEREGRGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQKLRLLTNNPRKIAGLQGYELEIVERVPLQMPTKQENKTYLQTKVTKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC7 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain AH187) GN=ribBA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 102/161 (63.35%), Postives = 126/161 (78.26%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GDI  G  +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  238 KGDISTGDPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 105/158 (66.46%), Postives = 122/158 (77.22%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +GD+   + +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQDDG DTVEANEELG   D R+YGIGAQ+L+DLGVR M+LMTNNP K VGL+GYGL +  RVPL       NK YLETKR KMGH+
Sbjct:  244 KGDVSTDEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDDGFDTVEANEELGFKADLRDYGIGAQILQDLGVRKMRLMTNNPKKVVGLEGYGLEIVERVPLEIEPNAVNKTYLETKRDKMGHM 400          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.861e-53
Identity = 98/157 (62.42%), Postives = 125/157 (79.62%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            +G++    ++LVRVHSEC+TGDI GS RCDCG+QL+ AM  I   G GVLVYLRG EGRGIGLGHK+RAY LQD+G DTV+AN  +G PVDSREYGIGAQ+L DL + T+KL+T+NP KY GL+G+GL++  RVPL   I ++N++YL TK+ +MGH
Sbjct:  250 KGNVAGKSNVLVRVHSECVTGDILGSKRCDCGEQLSSAMSYIAEKGTGVLVYLRGQEGRGIGLGHKVRAYALQDNGYDTVDANLAMGFPVDSREYGIGAQILVDLKLTTIKLITHNPQKYFGLQGFGLSITERVPLPVRISEDNEQYLRTKQERMGH 406          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_PROA2 (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ribBA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.881e-53
Identity = 103/164 (62.80%), Postives = 123/164 (75.00%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESN 510
            +GD    + +LVRVHS+C TGDIF S RCDCG+QLA AMQQIE AG+GVL+YL   EGRGIGL +KL+AYNLQD G DTVEANE+LG   D R+YGIGAQ+L+DLGV+ M+L+TNNP K VGL+GYGL +  RVP+       N  YLETKR KMGH+     N
Sbjct:  246 KGDFSTDEPVLVRVHSQCATGDIFASLRCDCGNQLASAMQQIEKAGKGVLIYLM-QEGRGIGLINKLKAYNLQDQGFDTVEANEQLGFKADLRDYGIGAQILQDLGVKKMRLLTNNPKKIVGLEGYGLEIVERVPIEIAPNSVNLSYLETKRDKMGHMINCSCN 408          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_GEOSW (Riboflavin biosynthesis protein ribBA OS=Geobacillus sp. (strain WCH70) GN=ribBA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 102/158 (64.56%), Postives = 122/158 (77.22%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +G+I   +  LVRVHSECLTGD+FGS RCDCG QL  A++QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ+ G DTVEANE LG P D R+YGIGAQ+L+DLGV  M+L+TNNP K  GLKG+GL V  RVPL  P  KEN++YL TK  K+GH+
Sbjct:  238 KGEIIPDEPTLVRVHSECLTGDVFGSCRCDCGPQLHAALRQIEEEGRGVLLYMR-QEGRGIGLINKLRAYKLQEQGYDTVEANERLGFPADLRDYGIGAQILKDLGVTKMRLLTNNPRKITGLKGHGLEVVERVPLQMPANKENEKYLRTKYEKLGHM 394          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_BACC44.415e-5463.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC25.766e-5463.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC15.766e-5463.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCQ9.835e-5463.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCN9.835e-5462.11Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC79.835e-5463.35Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PROVI1.284e-5366.46Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_CHLPN2.861e-5362.42Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_PROA24.881e-5362.80Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_GEOSW8.325e-5364.56Riboflavin biosynthesis protein ribBA OS=Geobacill... [more]

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Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
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