CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNWW (Riboflavin biosynthesis protein ribBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.087e-52
Identity = 102/158 (64.56%), Postives = 123/158 (77.85%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +G+  + + ILVRVHSECLTGD+FGS RCDCG+QL  AM  I + G+GVL+Y+R  EGRGIGL +K++AY LQD+GRDTVEAN ELG P D R+YGIGAQ+L DLGVR M+LMTNNP K  GL+GYGL V  RV +  P K EN RYL TK+ KMGH+
Sbjct:  238 KGEWEEDEPILVRVHSECLTGDVFGSRRCDCGEQLETAMSMIASEGKGVLLYMR-QEGRGIGLLNKIKAYKLQDNGRDTVEANLELGFPADLRDYGIGAQILVDLGVRKMRLMTNNPKKIRGLEGYGLEVVERVAIEMPHKPENTRYLRTKKEKMGHL 394          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGL (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum GN=ribBA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.087e-52
Identity = 96/158 (60.76%), Postives = 128/158 (81.01%), Query Frame = 1
Query:   22 GDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            GD+    G+++LVRVHSECLTGD+FGS RCDCG QL  +++ I+ AGRGV+VY+RGHEGRGIGL  KLRAY LQD+G DTV+AN  LGLP D+RE+G  AQ+L DLGVR++ L++NNP+K VGL+G+G+++A R P+   + ++N RYL+TKR +MGH
Sbjct:  250 GDVASDGGENVLVRVHSECLTGDVFGSRRCDCGQQLHESLRLIQEAGRGVVVYMRGHEGRGIGLLAKLRAYQLQDEGADTVDANLALGLPADAREFGTSAQILYDLGVRSLNLISNNPAKKVGLEGHGISIASRTPIPVAVHEDNVRYLKTKRDRMGH 407          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGB (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum (strain R) GN=ribBA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.087e-52
Identity = 96/158 (60.76%), Postives = 128/158 (81.01%), Query Frame = 1
Query:   22 GDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            GD+    G+++LVRVHSECLTGD+FGS RCDCG QL  +++ I+ AGRGV+VY+RGHEGRGIGL  KLRAY LQD+G DTV+AN  LGLP D+RE+G  AQ+L DLGVR++ L++NNP+K VGL+G+G+++A R P+   + ++N RYL+TKR +MGH
Sbjct:  250 GDVASDGGENVLVRVHSECLTGDVFGSRRCDCGQQLHESLRLIQEAGRGVVVYMRGHEGRGIGLLAKLRAYQLQDEGADTVDANLALGLPADAREFGTSAQILYDLGVRSLNLISNNPAKKVGLEGHGISIASRTPIPVAVHEDNVRYLKTKRDRMGH 407          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_PELLD (Riboflavin biosynthesis protein ribBA OS=Pelodictyon luteolum (strain DSM 273) GN=ribBA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +GD+  G+ +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQD+G DTVEANE+LG   D R+YGIGAQ+L+DLGVR M+L+TNNP K +GL+GYGL +  R+PL     + N+ YLETKR KMGH+
Sbjct:  244 KGDVSSGEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDEGFDTVEANEQLGFKADLRDYGIGAQILQDLGVRKMRLLTNNPKKVIGLEGYGLEIVERLPLEIAPNEVNQFYLETKRDKMGHM 400          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSU (Riboflavin biosynthesis protein ribBA OS=Bacillus subtilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.164e-52
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = 1
Query:   22 GDIGDGQD-ILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            GD+  G++ +LVRVHSECLTGD+FGS RCDCG QL  A+ QI A GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGVR MKL+TNNP K  GL+GYGL+++ RVPL    K+ NK+YL+TK  K+GH+
Sbjct:  239 GDVPFGEEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALNQIAAEGRGVLLYLR-QEGRGIGLINKLKAYKLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVRNMKLLTNNPRKIAGLEGYGLSISERVPLQMEAKEHNKKYLQTKMNKLGHL 395          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_PELPB (Riboflavin biosynthesis protein ribBA OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.205e-52
Identity = 101/160 (63.12%), Postives = 121/160 (75.62%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 498
            +GD+   + +LVRVHS+C TGD F S RCDCG+QLA A+  IE  GRGVL+YL   EGRGIGL +KL+AYNLQD G DTVEANE+LG   D R+YGIGAQ+L+DLGVR MKLMTNNP K VGL+GYGL +  RVPL       N+ YL+TKR K+GH+ G
Sbjct:  244 KGDVTTDEPVLVRVHSQCATGDTFASLRCDCGNQLASALTMIEKEGRGVLIYLM-QEGRGIGLINKLKAYNLQDQGYDTVEANEKLGFKADLRDYGIGAQILKDLGVRKMKLMTNNPKKVVGLEGYGLEIVERVPLEMASNPMNQFYLDTKRDKLGHMIG 402          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CLONN (Riboflavin biosynthesis protein ribBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.966e-51
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLES 507
            +GDI +G+ +L+RVHSECLTGD+ GS RCDCGDQLA A++QI   GRG L+Y+R  EGRGIGL +K++AY LQD+G DTV+AN  LG P D R+YGIGAQ+L+DLGV  ++LMTNNP K  G+ GYG+ +  RVP+     K+N+ YL TK+ +MGHI   ++
Sbjct:  242 KGDIKNGEPVLIRVHSECLTGDVLGSLRCDCGDQLAQALRQINKEGRGALLYMR-QEGRGIGLINKIKAYKLQDNGMDTVDANLALGFPEDLRDYGIGAQILKDLGVEKVRLMTNNPKKVSGISGYGIEIVERVPIEIECNKKNEFYLRTKKERMGHILNFKN 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_BURMA (GTP cyclohydrolase-2 OS=Burkholderia mallei GN=ribA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 495
            GD+ +   +L R+HSECLTGD+FGS RCDCG+QL L+++ I A GRGVL+YLRGHEGRGIGL +K+RAY LQ+ GRDTVEAN +LGLP D+REY   A +LR L V +++LM+NNP K+  L  +G+ V  RV L  P+++EN+RY+ TK+ K GH Y
Sbjct:   36 GDVAEQPSVLTRLHSECLTGDVFGSYRCDCGEQLDLSLRYIAAEGRGVLLYLRGHEGRGIGLSNKIRAYALQEQGRDTVEANLDLGLPDDAREYDSAAAILRILKVTSVRLMSNNPKKFDTLARHGIPVCERVALAVPVREENERYIRTKQLKFGHYY 193          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 94/158 (59.49%), Postives = 119/158 (75.32%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 495
            G+  + + +LVRVHSECLTGD+F S RCDC  QL  A++ I   G+GVLVY+ GHEGRGIG+ +K++AY LQ+ G DTVEANE+LG P D R+YGIGAQ+LRDLGVR MKLMTNNP K V L+G+GL V  RVP+       NK YL+ K+ K+GH++
Sbjct:  249 GEWKEDEPVLVRVHSECLTGDVFRSFRCDCRPQLEKALEMIAKEGKGVLVYILGHEGRGIGIANKIKAYELQEKGYDTVEANEKLGYPPDLRDYGIGAQILRDLGVRKMKLMTNNPRKIVALEGFGLEVVERVPIKIEPNPYNKIYLQVKKDKLGHMF 406          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACAM (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens GN=ribBA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.584e-49
Identity = 96/149 (64.43%), Postives = 116/149 (77.85%), Query Frame = 1
Query:   46 ILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +LVRVHSECLTGD+F S RCDCG QL  A++QI   GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGV+ MKL+TNNP K  GL+GYGL+++ RVPL     + NK+YL+TK  K+GH+
Sbjct:  248 VLVRVHSECLTGDVFASHRCDCGPQLHAALRQIAEEGRGVLLYLR-QEGRGIGLINKLKAYRLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVQHMKLLTNNPRKIAGLEGYGLSISDRVPLQMEASEHNKQYLQTKMKKLGHL 395          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_SYNWW1.087e-5264.56Riboflavin biosynthesis protein ribBA OS=Syntropho... [more]
RIBBA_CORGL1.087e-5260.76Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_CORGB1.087e-5260.76Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_PELLD1.855e-5263.29Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBBA_BACSU3.164e-5265.19Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PELPB9.205e-5263.13Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBBA_CLONN5.966e-5157.67Riboflavin biosynthesis protein ribBA OS=Clostridi... [more]
RIBA_BURMA6.597e-5058.23GTP cyclohydrolase-2 OS=Burkholderia mallei GN=rib... [more]
RIBBA_AQUAE1.125e-4959.49Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBBA_BACAM5.584e-4964.43Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
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