CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CORAM (Riboflavin biosynthesis protein ribBA OS=Corynebacterium ammoniagenes GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 84/155 (54.19%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   25 DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            ++   +D+ VRVHSECLTGD+F S RCDCG QL  +M+ I+ AG+G+++YLRGHEGRGIGL  KL+AY+LQD G DTV+AN E GLP D+REY +  Q+LRDLG+++  L+TNNP K  GL+G+G+  +   P+      +N  YL TKR +M H
Sbjct:  254 ELNGAEDVFVRVHSECLTGDVFHSRRCDCGQQLHQSMEIIQEAGQGIIIYLRGHEGRGIGLLAKLKAYSLQDSGLDTVDANLEQGLPEDAREYSVAGQILRDLGIKSANLLTNNPHKGEGLRGFGVEASAHTPVEIEPNADNIDYLRTKRDRMNH 408          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFR (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 87/150 (58.00%), Postives = 114/150 (76.00%), Query Frame = 1
Query:   40 QDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  250 EPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYMN-QEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFN (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ribBA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 87/150 (58.00%), Postives = 114/150 (76.00%), Query Frame = 1
Query:   40 QDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  250 EPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYMN-QEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_UNCTG (Riboflavin biosynthesis protein ribBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 88/158 (55.70%), Postives = 117/158 (74.05%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +G + + Q++LVRVHS C TGDIF S RCDCGDQL  A++ +  A +GV++Y+   EGRGIGL +KL+AY LQ+ G DTVEAN+ LG   D R+YGIGAQML +LG++++ LMTNNP K  GL+ YGL +  RVPL     K N++YL+TK+ KMGH+
Sbjct:  243 KGVVKNRQNVLVRVHSSCETGDIFHSLRCDCGDQLETALKAVGEAEQGVVLYIH-QEGRGIGLANKLKAYRLQEKGMDTVEANKALGFDPDLRDYGIGAQMLSELGIKSINLMTNNPGKINGLESYGLKITKRVPLEISPSKSNEKYLKTKKEKMGHM 399          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACTN (Riboflavin biosynthesis protein ribBA OS=Bacteroides thetaiotaomicron GN=ribBA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 91/157 (57.96%), Postives = 113/157 (71.97%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            +G   + + ILVRVHS C TGDI GS RCDCG+QL  AM+ IE  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR+LGV  MKL+TNNP K VGL+ YGL +   VP+ T     N+RYL TK+ +MGH
Sbjct:  243 KGTWNEDEPILVRVHSSCATGDILGSHRCDCGEQLHKAMEMIEKEGKGVVVYLN-QEGRGIGLMEKMKAYKLQEDGMDTVDANLCLGHLADERDYGVGAQILRELGVHKMKLLTNNPVKRVGLEAYGLEIVENVPVETVPNPYNERYLRTKKERMGH 398          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPK (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain KT2440) GN=ribA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 94/166 (56.63%), Postives = 110/166 (66.27%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:   38 GDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQGEV 202          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEP1 (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ribA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 94/166 (56.63%), Postives = 110/166 (66.27%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:   38 GDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQGEV 202          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_CYTH3 (Riboflavin biosynthesis protein ribBA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ribBA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.090e-44
Identity = 86/150 (57.33%), Postives = 109/150 (72.67%), Query Frame = 1
Query:   40 QDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            + ++VRVHS C+TGDIFGS RCDCG QL  AM+ I+  G+GV++Y+   EGRGIGL +KL+AY LQ+ GRDTVEAN ELG  +D R+YG GAQ+LRDL +  ++L+TNNP K   L GYGL +   VP+  P    N  YL+TKR KMGH
Sbjct:  251 EPVMVRVHSSCVTGDIFGSCRCDCGPQLHKAMEMIQQEGKGVILYMN-QEGRGIGLLNKLKAYKLQEQGRDTVEANLELGFKMDQRDYGTGAQILRDLNISKLRLITNNPVKRAALAGYGLEITEAVPIEIPSNPHNLEYLKTKRDKMGH 399          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPG (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain GB-1) GN=ribA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.859e-44
Identity = 93/164 (56.71%), Postives = 109/164 (66.46%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNG 513
            GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G
Sbjct:   38 GDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQG 200          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEFS (GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (strain SBW25) GN=ribA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.859e-44
Identity = 95/166 (57.23%), Postives = 109/166 (65.66%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            GDI DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV +++LMTNNP K   L   G+ VA RVPL T     NK YL TK +K+ H+ G E  G +
Sbjct:   38 GDIADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIAREGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVSSLRLMTNNPRKVKALTEMGITVAERVPLHTGHNPHNKLYLATKASKLDHMMGNEHQGEV 202          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_CORAM9.857e-4654.19Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_BACFR1.681e-4558.00Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFN1.681e-4558.00Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_UNCTG3.746e-4555.70Riboflavin biosynthesis protein ribBA OS=Unculture... [more]
RIBBA_BACTN3.746e-4557.96Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBA_PSEPK6.389e-4556.63GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEP16.389e-4556.63GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBBA_CYTH31.090e-4457.33Riboflavin biosynthesis protein ribBA OS=Cytophaga... [more]
RIBA_PSEPG1.859e-4456.71GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEFS1.859e-4457.23GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (s... [more]

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Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
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